RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 TMEM267Q0VDI3 215 aaPredicted RBP8.2□□□□□ -1.1
SS18-205ENST00000542420 GAMTQ14353 236 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 TMEM249Q2WGJ8 235 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 AWAT1Q58HT5 328 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 SLC35E3Q7Z769 313 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 C1QL4Q86Z23 238 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 TAF15Q92804 592 aaKnown RBP eCLIP8.2□□□□□ -1.1
SS18-205ENST00000542420 DUSP13Q9UII6 198 aa8.2□□□□□ -1.1
SS18-205ENST00000542420 C7orf77A4D0Y5 90 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 VSTM5A8MXK1 200 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 ZG16O60844 167 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 MPDU1O75352 247 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 METTL15P1P0C7V9 234 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 IAPPP10997 89 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 SPINK2P20155 84 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 MDKP21741 143 aaPredicted RBP8.19□□□□□ -1.1
SS18-205ENST00000542420 SSTR5P35346 364 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 PKIAP61925 76 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 PNRC1Q12796 327 aaPredicted RBP8.19□□□□□ -1.1
SS18-205ENST00000542420 ICAM4Q14773 271 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 POU2AF1Q16633 256 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 ZNF429Q86V71 674 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 OR10P1Q8NGE3 313 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 DTD1Q8TEA8 209 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 ITLN1Q8WWA0 313 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 ISOC2Q96AB3 205 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 YPEL4Q96NS1 127 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 ZNF665Q9H7R5 613 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 SIRT7Q9NRC8 400 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 CALYQ9NYX4 217 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 FZR1Q9UM11 496 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 FBXO7Q9Y3I1 522 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 HCFC1P51610 2035 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 USF3Q68DE3 2245 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 TRGV8A0A0C4DH27 118 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 MARCH11A6NNE9 402 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 C17orf112F2Z3M2 114 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 C3orf80F5H4A9 247 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 C16orf97H3BN30 126 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 RAMP3O60896 148 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 TNFRSF1AP19438 455 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 THBS3P49746 956 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 ASCL1P50553 236 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 ATP5IP56385 69 aaPredicted RBP8.19□□□□□ -1.1
SS18-205ENST00000542420 ERVK-16P61578 105 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 TNFAIP6P98066 277 aaPredicted RBP8.19□□□□□ -1.1
SS18-205ENST00000542420 ARL16Q0P5N6 197 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 AKIRIN2Q53H80 203 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 MOGAT3Q86VF5 341 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 LRP11Q86VZ4 500 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 R3HDM4Q96D70 268 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 OR4C12Q96R67 309 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 GNG12Q9UBI6 72 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 PSG11Q9UQ72 335 aa8.19□□□□□ -1.1
SS18-205ENST00000542420 RAI1Q7Z5J4 1906 aaPredicted RBP8.18□□□□□ -1.1
SS18-205ENST00000542420 TRGV10A0A0A0MS01 117 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 KBTBD11-OT1A0A1B0GTJ5 212 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 FNDC10F2Z333 226 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 IGHV1-46P01743 117 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 ARG1P05089 322 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 IRF2P14316 349 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 G6PCP35575 357 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 OR2B8PP59922 312 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 RUNX1Q01196 453 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 MEF2CQ06413 473 aaPredicted RBP8.18□□□□□ -1.1
SS18-205ENST00000542420 ZNF816Q0VGE8 651 aaPredicted RBP8.18□□□□□ -1.1
SS18-205ENST00000542420 SPANXN5Q5MJ07 72 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 ZNF788Q6ZQV5 615 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 ZNF808Q8N4W9 903 aaPredicted RBP8.18□□□□□ -1.1
SS18-205ENST00000542420 DDB2Q92466 427 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 IFI27L2Q9H2X8 130 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 CLN8Q9UBY8 286 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 DSCAMO60469 2012 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 LINC00473A8K010 186 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 KRASP01116 189 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 BCL2P10415 239 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 TMPRSS3P57727 454 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 DOLPP1Q86YN1 238 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 OR4S2Q8NH73 311 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 TVP23CQ96ET8 276 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 GCM1Q9NP62 436 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 NGBQ9NPG2 151 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 RPS10P5Q9NQ39 176 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 KCNIP2Q9NS61 270 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 RPRMQ9NS64 109 aa8.18□□□□□ -1.1
SS18-205ENST00000542420 DYSFO75923 2080 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 CTXND1A0A1B0GTU2 59 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 NKX6-3A6NJ46 265 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 H3BP45 60 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 RBPJQ06330 500 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 IZUMO4Q1ZYL8 232 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 C17orf58Q2M2W7 97 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 ZNF787Q6DD87 383 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 FAM71F2Q6NXP2 309 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 C8orf31Q8N9H6 132 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 UBALD1Q8TB05 177 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 S1PR3Q99500 378 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 ABHD14AQ9BUJ0 271 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 TMEM242Q9NWH2 141 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 GAR1Q9NY12 217 aaKnown RBP8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms