RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 TMEM171Q8WVE6 324 aa16.28■□□□□ 0.2
CCDC88B-204ENST00000463837 RCC1LQ96I51 464 aaKnown RBP16.28■□□□□ 0.2
CCDC88B-204ENST00000463837 MRPL37Q9BZE1 423 aaKnown RBP16.28■□□□□ 0.2
CCDC88B-204ENST00000463837 WNT5BQ9H1J7 359 aa16.28■□□□□ 0.2
CCDC88B-204ENST00000463837 A0A0G2JMZ2 1700 aa16.28■□□□□ 0.2
CCDC88B-204ENST00000463837 LRRC37A2A6NM11 1700 aa16.28■□□□□ 0.2
CCDC88B-204ENST00000463837 MPV17P39210 176 aa16.28■□□□□ 0.2
CCDC88B-204ENST00000463837 HSPE1P61604 102 aaKnown RBP16.28■□□□□ 0.2
CCDC88B-204ENST00000463837 RPRMQ9NS64 109 aa16.28■□□□□ 0.2
CCDC88B-204ENST00000463837 INSIG2Q9Y5U4 225 aa16.28■□□□□ 0.2
CCDC88B-204ENST00000463837 FAM186AA6NE01 2351 aa16.28■□□□□ 0.2
CCDC88B-204ENST00000463837 UCP1P25874 307 aa16.28■□□□□ 0.2
CCDC88B-204ENST00000463837 LGALS7P47929 136 aa16.28■□□□□ 0.2
CCDC88B-204ENST00000463837 MUC15Q8N387 334 aa16.28■□□□□ 0.2
CCDC88B-204ENST00000463837 TRAV9-1A0A075B6T8 112 aa16.28■□□□□ 0.2
CCDC88B-204ENST00000463837 COMPP49747 757 aaPredicted RBP16.28■□□□□ 0.2
CCDC88B-204ENST00000463837 IZUMO4Q1ZYL8 232 aa16.28■□□□□ 0.2
CCDC88B-204ENST00000463837 DIRC2Q96SL1 478 aa16.28■□□□□ 0.2
CCDC88B-204ENST00000463837 SCNM1Q9BWG6 230 aa16.28■□□□□ 0.2
CCDC88B-204ENST00000463837 JPT1Q9UK76 154 aa16.28■□□□□ 0.2
CCDC88B-204ENST00000463837 GAGE10A6NGK3 116 aa16.27■□□□□ 0.2
CCDC88B-204ENST00000463837 CCL21O00585 134 aa16.27■□□□□ 0.2
CCDC88B-204ENST00000463837 LINC00869P0C866 280 aa16.27■□□□□ 0.2
CCDC88B-204ENST00000463837 LRRC75BQ2VPJ9 315 aa16.27■□□□□ 0.2
CCDC88B-204ENST00000463837 PRNTQ86SH4 94 aa16.27■□□□□ 0.2
CCDC88B-204ENST00000463837 RNF126Q9BV68 326 aa16.27■□□□□ 0.2
CCDC88B-204ENST00000463837 AICDAQ9GZX7 198 aa16.27■□□□□ 0.2
CCDC88B-204ENST00000463837 GRIFINA4D1Z8 144 aa16.27■□□□□ 0.2
CCDC88B-204ENST00000463837 OR4C46A6NHA9 309 aa16.27■□□□□ 0.2
CCDC88B-204ENST00000463837 LEPROTL1O95214 131 aa16.27■□□□□ 0.2
CCDC88B-204ENST00000463837 C8orf88P0DMB2 117 aa16.27■□□□□ 0.2
CCDC88B-204ENST00000463837 MC5RP33032 325 aa16.27■□□□□ 0.2
CCDC88B-204ENST00000463837 SLC25A34Q6PIV7 304 aa16.27■□□□□ 0.2
CCDC88B-204ENST00000463837 PMCHL2Q9BQD1 86 aa16.27■□□□□ 0.2
CCDC88B-204ENST00000463837 MRPL32Q9BYC8 188 aaKnown RBP16.27■□□□□ 0.2
CCDC88B-204ENST00000463837 PARD6GQ9BYG4 376 aaPredicted RBP16.27■□□□□ 0.2
CCDC88B-204ENST00000463837 ZNF430Q9H8G1 570 aaPredicted RBP16.27■□□□□ 0.2
CCDC88B-204ENST00000463837 AP5S1Q9NUS5 200 aa16.27■□□□□ 0.2
CCDC88B-204ENST00000463837 MARCH11A6NNE9 402 aa16.27■□□□□ 0.19
CCDC88B-204ENST00000463837 KRTCAP3Q53RY4 240 aa16.27■□□□□ 0.19
CCDC88B-204ENST00000463837 MMD2Q8IY49 270 aa16.27■□□□□ 0.19
CCDC88B-204ENST00000463837 F2RL2O00254 374 aa16.27■□□□□ 0.19
CCDC88B-204ENST00000463837 ZG16O60844 167 aa16.27■□□□□ 0.19
CCDC88B-204ENST00000463837 TBX6O95947 436 aaPredicted RBP16.27■□□□□ 0.19
CCDC88B-204ENST00000463837 RELBQ01201 579 aa16.27■□□□□ 0.19
CCDC88B-204ENST00000463837 OR10S1Q8NGN2 331 aa16.27■□□□□ 0.19
CCDC88B-204ENST00000463837 UBTD1Q9HAC8 227 aa16.27■□□□□ 0.19
CCDC88B-204ENST00000463837 LYPD3O95274 346 aa16.26■□□□□ 0.19
CCDC88B-204ENST00000463837 PATJQ8NI35 1801 aa16.26■□□□□ 0.19
CCDC88B-204ENST00000463837 POLR2AP24928 1970 aaKnown RBP16.26■□□□□ 0.19
CCDC88B-204ENST00000463837 LOC101059948A0A1B0GTJ6 334 aa16.26■□□□□ 0.19
CCDC88B-204ENST00000463837 CACNA1IQ9P0X4 2223 aa16.26■□□□□ 0.19
CCDC88B-204ENST00000463837 ALPK2Q86TB3 2170 aa16.26■□□□□ 0.19
CCDC88B-204ENST00000463837 REG1BP48304 166 aa16.26■□□□□ 0.19
CCDC88B-204ENST00000463837 KIAA1644Q3SXP7 199 aa16.26■□□□□ 0.19
CCDC88B-204ENST00000463837 FTH1P19P0C7X4 201 aa16.26■□□□□ 0.19
CCDC88B-204ENST00000463837 PTGDSP41222 190 aa16.26■□□□□ 0.19
CCDC88B-204ENST00000463837 J3KRW8 73 aa16.25■□□□□ 0.19
CCDC88B-204ENST00000463837 FXYD3Q14802 87 aa16.25■□□□□ 0.19
CCDC88B-204ENST00000463837 RTP5Q14D33 572 aa16.25■□□□□ 0.19
CCDC88B-204ENST00000463837 CLDND2Q8NHS1 167 aa16.25■□□□□ 0.19
CCDC88B-204ENST00000463837 BRWD3Q6RI45 1802 aa16.25■□□□□ 0.19
CCDC88B-204ENST00000463837 H3BVH4 76 aa16.25■□□□□ 0.19
CCDC88B-204ENST00000463837 LEMD1Q68G75 181 aa16.25■□□□□ 0.19
CCDC88B-204ENST00000463837 SLC25A10Q9UBX3 287 aaPredicted RBP16.25■□□□□ 0.19
CCDC88B-204ENST00000463837 UBE2CO00762 179 aa16.25■□□□□ 0.19
CCDC88B-204ENST00000463837 KLF7O75840 302 aaPredicted RBP16.25■□□□□ 0.19
CCDC88B-204ENST00000463837 SRIP30626 198 aa16.25■□□□□ 0.19
CCDC88B-204ENST00000463837 P2RY6Q15077 328 aa16.25■□□□□ 0.19
CCDC88B-204ENST00000463837 LINC00587B1AMM8 73 aa16.25■□□□□ 0.19
CCDC88B-204ENST00000463837 CTSBP07858 339 aa16.25■□□□□ 0.19
CCDC88B-204ENST00000463837 CYB5R2Q6BCY4 276 aa16.25■□□□□ 0.19
CCDC88B-204ENST00000463837 SLC25A28Q96A46 364 aa16.25■□□□□ 0.19
CCDC88B-204ENST00000463837 ZNF735P0CB33 412 aa16.24■□□□□ 0.19
CCDC88B-204ENST00000463837 RPL31P62899 125 aaKnown RBP16.24■□□□□ 0.19
CCDC88B-204ENST00000463837 CALHM1Q8IU99 346 aa16.24■□□□□ 0.19
CCDC88B-204ENST00000463837 WDYHV1Q96HA8 205 aa16.24■□□□□ 0.19
CCDC88B-204ENST00000463837 COA4Q9NYJ1 87 aa16.24■□□□□ 0.19
CCDC88B-204ENST00000463837 OTX1P32242 354 aaPredicted RBP16.24■□□□□ 0.19
CCDC88B-204ENST00000463837 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16.24■□□□□ 0.19
CCDC88B-204ENST00000463837 DNAJC4Q9NNZ3 241 aa16.24■□□□□ 0.19
CCDC88B-204ENST00000463837 TNS1Q9HBL0 1735 aaKnown RBP16.24■□□□□ 0.19
CCDC88B-204ENST00000463837 S1PR2O95136 353 aa16.24■□□□□ 0.19
CCDC88B-204ENST00000463837 CELA2AP08217 269 aa16.24■□□□□ 0.19
CCDC88B-204ENST00000463837 FABP2P12104 132 aa16.24■□□□□ 0.19
CCDC88B-204ENST00000463837 RPL8P62917 257 aaKnown RBP16.24■□□□□ 0.19
CCDC88B-204ENST00000463837 SDF2L1Q9HCN8 221 aa16.24■□□□□ 0.19
CCDC88B-204ENST00000463837 STARD6P59095 220 aa16.24■□□□□ 0.19
CCDC88B-204ENST00000463837 DRAM1Q8N682 238 aa16.24■□□□□ 0.19
CCDC88B-204ENST00000463837 TMEM189A5PLL7 270 aa16.23■□□□□ 0.19
CCDC88B-204ENST00000463837 RPL27AP46776 148 aaKnown RBP16.23■□□□□ 0.19
CCDC88B-204ENST00000463837 ZNF788Q6ZQV5 615 aa16.23■□□□□ 0.19
CCDC88B-204ENST00000463837 ZNF714Q96N38 554 aa16.23■□□□□ 0.19
CCDC88B-204ENST00000463837 LINC00470Q9BZP3 86 aa16.23■□□□□ 0.19
CCDC88B-204ENST00000463837 ODAMA1E959 279 aa16.23■□□□□ 0.19
CCDC88B-204ENST00000463837 GCHFRP30047 84 aa16.23■□□□□ 0.19
CCDC88B-204ENST00000463837 TMEM208Q9BTX3 173 aa16.23■□□□□ 0.19
CCDC88B-204ENST00000463837 NPBWR2P48146 333 aa16.23■□□□□ 0.19
CCDC88B-204ENST00000463837 HOXA4Q00056 320 aaPredicted RBP16.23■□□□□ 0.19
CCDC88B-204ENST00000463837 FAM214BQ7L5A3 538 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms