RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 BPIFA4PQ86YQ2 179 aa10.4□□□□□ -0.75
CCDC88A-207ENST00000436346 RFLNBQ8N5W9 214 aa10.4□□□□□ -0.75
CCDC88A-207ENST00000436346 MRAP2Q96G30 205 aa10.4□□□□□ -0.75
CCDC88A-207ENST00000436346 OR2A7Q96R45 310 aa10.4□□□□□ -0.75
CCDC88A-207ENST00000436346 CYB5R1Q9UHQ9 305 aa10.4□□□□□ -0.75
CCDC88A-207ENST00000436346 PITPNC1Q9UKF7 332 aa10.4□□□□□ -0.75
CCDC88A-207ENST00000436346 A0A0J9YW62 118 aa10.4□□□□□ -0.75
CCDC88A-207ENST00000436346 CRHP06850 196 aa10.4□□□□□ -0.75
CCDC88A-207ENST00000436346 GPX1P07203 203 aa10.4□□□□□ -0.75
CCDC88A-207ENST00000436346 RPL27AP46776 148 aaKnown RBP10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 GCSAMQ8N6F7 178 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 COPS9Q8WXC6 57 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 ZNF56Q15929 161 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 FAM168AQ92567 244 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 RBKSQ9H477 322 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 BET1LQ9NYM9 111 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 PXMP4Q9Y6I8 212 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 A0A0B4J293 547 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 IGHV1-69-2A0A0G2JMI3 117 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 ARL14EPLP0DKL9 152 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 MC5RP33032 325 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 MESP2Q0VG99 397 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 MRPL24Q96A35 216 aaKnown RBP10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 ELOVL1Q9BW60 279 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 CTXND1A0A1B0GTU2 59 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 A0A1W2PRX2 142 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 EWSR1Q01844 656 aaKnown RBP eCLIP10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 B4DEV8 164 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 IGF2P01344 180 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 TMEM191AQ9H0A3 160 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 CENPVL1A0A0U1RR11 272 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 FCGR2BP31994 310 aaPredicted RBP10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 KLF14Q8TD94 323 aaPredicted RBP10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 MARCH11A6NNE9 402 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 SYNGR3O43761 229 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 SCNM1Q9BWG6 230 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 C1QAP02745 245 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 LINC00869P0C866 280 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 MPV17P39210 176 aa10.39□□□□□ -0.75
CCDC88A-207ENST00000436346 A0A1W2PPC1 479 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 ODAMA1E959 279 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 RCC1P18754 421 aaPredicted RBP10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 RPL29P47914 159 aaKnown RBP10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 PSG9Q00887 426 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 LIPFP07098 398 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 FGF12P61328 243 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 NPIPB6E9PJ23 425 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 IGKV3-20P01619 116 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 ASAH2BP0C7U1 165 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 TSPOP30536 169 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 CKS2P33552 79 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 HSF4Q9ULV5 492 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 NGFRP08138 427 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 EFNB2P52799 333 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 SGK494Q96LW2 274 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 MGST3O14880 152 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 VSIG10L2P0DP72 767 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 SNRPEP62304 92 aaKnown RBP10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 ARL6IP6Q8N6S5 226 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 IL19Q9UHD0 177 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 GPR179Q6PRD1 2367 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 VSIG8P0DPA2 414 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 B9A039 149 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 CYB561D1Q8N8Q1 229 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 CXCL3P19876 107 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 MRGPRGQ86SM5 289 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 ATG101Q9BSB4 218 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 ELOVL5Q9NYP7 299 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 CALYQ9NYX4 217 aa10.38□□□□□ -0.75
CCDC88A-207ENST00000436346 LOC101059948A0A1B0GTJ6 334 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 ST6GALNAC2Q9UJ37 374 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 NDUFA2O43678 99 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 SCGB1A1P11684 91 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 MFAP2P55001 183 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 TMEM177Q53S58 311 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 OR5AU1Q8NGC0 362 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 KCNK17Q96T54 332 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 ZFP30Q9Y2G7 519 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 PAM16Q9Y3D7 125 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 CD99P14209 185 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 ADIPOQQ15848 244 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 FDCSPQ8NFU4 85 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 EEF1AKMT3Q96AZ1 226 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 SCMH1Q96GD3 660 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 CDS2O95674 445 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 PNKDQ8N490 385 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 MARS2Q96GW9 593 aaKnown RBP10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 KCNK7Q9Y2U2 307 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 LRRK2Q5S007 2527 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 SNURFLB1AK76 121 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 PPP1R17O96001 155 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 SCTP09683 121 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 SLC25A33Q9BSK2 321 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 TMEM74BQ9NUR3 256 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 CTDSPLO15194 276 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 MPDU1O75352 247 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 CD160O95971 181 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 RAB9AP51151 201 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 RPL24P83731 157 aaKnown RBP10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms