RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 REG1BP48304 166 aa11.6□□□□□ -0.55
CCDC88A-204ENST00000413716 GGTLC2Q14390 218 aa11.6□□□□□ -0.55
CCDC88A-204ENST00000413716 P2RY4P51582 365 aa11.6□□□□□ -0.55
CCDC88A-204ENST00000413716 TDGF1P3P51864 188 aa11.6□□□□□ -0.55
CCDC88A-204ENST00000413716 CADM4Q8NFZ8 388 aa11.6□□□□□ -0.55
CCDC88A-204ENST00000413716 OVOL2Q9BRP0 275 aa11.6□□□□□ -0.55
CCDC88A-204ENST00000413716 ZNF257Q9Y2Q1 563 aa11.6□□□□□ -0.55
CCDC88A-204ENST00000413716 VWC2LB2RUY7 222 aa11.6□□□□□ -0.55
CCDC88A-204ENST00000413716 ZNF585BQ52M93 769 aa11.6□□□□□ -0.55
CCDC88A-204ENST00000413716 DOCK1Q14185 1865 aa11.6□□□□□ -0.55
CCDC88A-204ENST00000413716 CDIPTO14735 213 aa11.6□□□□□ -0.55
CCDC88A-204ENST00000413716 TNFRSF6BO95407 300 aa11.6□□□□□ -0.55
CCDC88A-204ENST00000413716 TMEM42Q69YG0 159 aa11.6□□□□□ -0.55
CCDC88A-204ENST00000413716 SUMO4Q6EEV6 95 aa11.6□□□□□ -0.55
CCDC88A-204ENST00000413716 H3BUT2 72 aa11.59□□□□□ -0.55
CCDC88A-204ENST00000413716 RGPD3A6NKT7 1758 aaPredicted RBP11.59□□□□□ -0.55
CCDC88A-204ENST00000413716 GPR183P32249 361 aa11.59□□□□□ -0.55
CCDC88A-204ENST00000413716 TIMM23BQ5SRD1 257 aa11.59□□□□□ -0.55
CCDC88A-204ENST00000413716 SSC4DQ8WTU2 575 aa11.59□□□□□ -0.55
CCDC88A-204ENST00000413716 SDF2L1Q9HCN8 221 aa11.59□□□□□ -0.55
CCDC88A-204ENST00000413716 ZNF205O95201 554 aa11.59□□□□□ -0.55
CCDC88A-204ENST00000413716 GPR6P46095 362 aaPredicted RBP11.59□□□□□ -0.55
CCDC88A-204ENST00000413716 SMAD4Q13485 552 aaKnown RBP11.59□□□□□ -0.55
CCDC88A-204ENST00000413716 CAMTA1Q9Y6Y1 1673 aa11.59□□□□□ -0.55
CCDC88A-204ENST00000413716 DEFB103AP81534 67 aa11.59□□□□□ -0.55
CCDC88A-204ENST00000413716 FGF22Q9HCT0 170 aa11.59□□□□□ -0.55
CCDC88A-204ENST00000413716 F8WEM9 126 aa11.59□□□□□ -0.55
CCDC88A-204ENST00000413716 GAGE13Q4V321 117 aa11.59□□□□□ -0.55
CCDC88A-204ENST00000413716 LINC00518Q8N0U6 118 aa11.59□□□□□ -0.55
CCDC88A-204ENST00000413716 VGLL1Q99990 258 aa11.59□□□□□ -0.55
CCDC88A-204ENST00000413716 MPZL1O95297 269 aa11.59□□□□□ -0.55
CCDC88A-204ENST00000413716 DNM1P46Q6ZS02 220 aa11.59□□□□□ -0.55
CCDC88A-204ENST00000413716 A0A1B0GW15 77 aa11.59□□□□□ -0.55
CCDC88A-204ENST00000413716 PIMREGQ9BSJ6 248 aa11.59□□□□□ -0.55
CCDC88A-204ENST00000413716 MRPL32Q9BYC8 188 aaKnown RBP11.59□□□□□ -0.55
CCDC88A-204ENST00000413716 M0R2P5 195 aa11.58□□□□□ -0.55
CCDC88A-204ENST00000413716 ISG15P05161 165 aa11.58□□□□□ -0.55
CCDC88A-204ENST00000413716 OR4X2Q8NGF9 303 aa11.58□□□□□ -0.55
CCDC88A-204ENST00000413716 COL6A6A6NMZ7 2263 aa11.58□□□□□ -0.55
CCDC88A-204ENST00000413716 PRR35P0CG20 571 aa11.58□□□□□ -0.56
CCDC88A-204ENST00000413716 C1orf174Q8IYL3 243 aa11.58□□□□□ -0.56
CCDC88A-204ENST00000413716 OR51G1Q8NGK1 321 aa11.58□□□□□ -0.56
CCDC88A-204ENST00000413716 PLA2G3Q9NZ20 509 aa11.58□□□□□ -0.56
CCDC88A-204ENST00000413716 TMEFF2Q9UIK5 374 aaPredicted RBP11.58□□□□□ -0.56
CCDC88A-204ENST00000413716 PGPA6NDG6 321 aa11.58□□□□□ -0.56
CCDC88A-204ENST00000413716 PRF1P14222 555 aa11.58□□□□□ -0.56
CCDC88A-204ENST00000413716 SDK2Q58EX2 2172 aa11.58□□□□□ -0.56
CCDC88A-204ENST00000413716 LSM6P62312 80 aaKnown RBP11.58□□□□□ -0.56
CCDC88A-204ENST00000413716 MMD2Q8IY49 270 aa11.58□□□□□ -0.56
CCDC88A-204ENST00000413716 TSC2P49815 1807 aa11.58□□□□□ -0.56
CCDC88A-204ENST00000413716 PEX7O00628 323 aa11.58□□□□□ -0.56
CCDC88A-204ENST00000413716 CBLN1P23435 193 aa11.58□□□□□ -0.56
CCDC88A-204ENST00000413716 FBLN7Q53RD9 439 aa11.58□□□□□ -0.56
CCDC88A-204ENST00000413716 MARVELD3Q96A59 401 aa11.58□□□□□ -0.56
CCDC88A-204ENST00000413716 CRYBG1Q9Y4K1 1723 aa11.58□□□□□ -0.56
CCDC88A-204ENST00000413716 SOCS1O15524 211 aa11.58□□□□□ -0.56
CCDC88A-204ENST00000413716 PF4P02776 101 aa11.58□□□□□ -0.56
CCDC88A-204ENST00000413716 RPL36A-HNRNPH2H7BZ11 118 aa11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 LEPP41159 167 aa11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 RPL27AP46776 148 aaKnown RBP11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 COL10A1Q03692 680 aa11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 CLEC2AQ6UVW9 174 aa11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 DCTN5Q9BTE1 182 aa11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 PLCH1Q4KWH8 1693 aa11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 SNAI2O43623 268 aa11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 C17orf47Q8NEP4 570 aa11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 HILPDAQ9Y5L2 63 aa11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 CCL7P80098 99 aa11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 TNFRSF14Q92956 283 aa11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 IGLV3-10A0A075B6K4 115 aa11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 THY1P04216 161 aa11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 LAMTOR3Q9UHA4 124 aa11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 CHST5Q9GZS9 411 aa11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 CASP8AP2Q9UKL3 1982 aa11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 FOXI3A8MTJ6 420 aaPredicted RBP11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 SNRPCP09234 159 aaKnown RBP11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 LDLRAD2Q5SZI1 272 aa11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 PATE1Q8WXA2 126 aa11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 FOXQ1Q9C009 403 aa11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 WDR54Q9H977 334 aa11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 LOC390937A0A1W2PQ73 354 aa11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 APOHP02749 345 aaPredicted RBP11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 SSBP2P81877 361 aaPredicted RBP11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 OR10J3Q5JRS4 329 aa11.57□□□□□ -0.56
CCDC88A-204ENST00000413716 IGKV6D-21A0A0A0MT36 114 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 C9JCJ5 164 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 NPIPB4C9JG80 1138 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 TOMM40O96008 361 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 CENPWQ5EE01 88 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 PRR7Q8TB68 274 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 LILRA5A6NI73 299 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 KIAA1644Q3SXP7 199 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 CD300LDQ6UXZ3 194 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 GFERP55789 205 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 SLC25A53Q5H9E4 307 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 DUX3Q96PT4 197 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 PLXNB2O15031 1838 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 TMPRSS3P57727 454 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 FMC1Q96HJ9 113 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 DOCK4Q8N1I0 1966 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms