RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 LYZL6O75951 148 aa10.2□□□□□ -0.78
HMGB1-206ENST00000405805 STAG3L3P0CL85 134 aa10.2□□□□□ -0.78
HMGB1-206ENST00000405805 MAGEA5P43359 124 aa10.2□□□□□ -0.78
HMGB1-206ENST00000405805 GBGT1Q8N5D6 347 aa10.2□□□□□ -0.78
HMGB1-206ENST00000405805 FAM89BQ8N5H3 189 aa10.2□□□□□ -0.78
HMGB1-206ENST00000405805 APOBEC3DQ96AK3 386 aaPredicted RBP10.2□□□□□ -0.78
HMGB1-206ENST00000405805 WDR61Q9GZS3 305 aaKnown RBP10.2□□□□□ -0.78
HMGB1-206ENST00000405805 PNRC2Q9NPJ4 139 aaKnown RBP10.2□□□□□ -0.78
HMGB1-206ENST00000405805 KIAA1549LQ6ZVL6 1849 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 ODAMA1E959 279 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 ZIC3O60481 467 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 F2RP25116 425 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 PAFAH1B2P68402 229 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 TIGITQ495A1 244 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 C1orf194Q5T5A4 169 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 TMEM211Q6ICI0 200 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 SAP25Q8TEE9 199 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 HS3ST6Q96QI5 342 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 GLRX2Q9NS18 164 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 PLA2G2EQ9NZK7 142 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 CELSR3Q9NYQ7 3312 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 RPL36A-HNRNPH2H7BZ11 118 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 CBLN1P23435 193 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 BRS3P32247 399 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 GNG3P63215 75 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 CATR1Q13166 79 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 EIF3IQ13347 325 aaKnown RBP10.19□□□□□ -0.78
HMGB1-206ENST00000405805 PRAMEF5Q5TYX0 476 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 PRAMEF6Q5VXH4 476 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 TMEM171Q8WVE6 324 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 FOXD3Q9UJU5 478 aaPredicted RBP10.19□□□□□ -0.78
HMGB1-206ENST00000405805 IFITM10A6NMD0 228 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 PGLYRP1O75594 196 aaPredicted RBP10.19□□□□□ -0.78
HMGB1-206ENST00000405805 HGFACQ04756 655 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 OR10G4Q8NGN3 311 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 OR10G9Q8NGN4 311 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 OR10G7Q8NGN6 311 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 BLNKQ8WV28 456 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 DAZAP1Q96EP5 407 aaKnown RBP10.19□□□□□ -0.78
HMGB1-206ENST00000405805 RBKSQ9H477 322 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 VSIRQ9H7M9 311 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 RNF122Q9H9V4 155 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 LOXL2Q9Y4K0 774 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 MYO15AQ9UKN7 3530 aa10.19□□□□□ -0.78
HMGB1-206ENST00000405805 TFF1P04155 84 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 CELA3AP09093 270 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 BPIFA4PQ86YQ2 179 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 OR10G8Q8NGN5 311 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 TMEM186Q96B77 213 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 MSI2Q96DH6 328 aaKnown RBP10.18□□□□□ -0.78
HMGB1-206ENST00000405805 PSG11Q9UQ72 335 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 SRP19P09132 144 aaKnown RBP10.18□□□□□ -0.78
HMGB1-206ENST00000405805 BCL2P10415 239 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 SRD5A2P31213 254 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 ZNF826PQ6ZT77 177 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 SSX8Q7RTT4 187 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 DTX1Q86Y01 620 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 FAM19A2Q8N3H0 131 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 NEIL1Q96FI4 390 aaPredicted RBP10.18□□□□□ -0.78
HMGB1-206ENST00000405805 RAB40CQ96S21 281 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 MDH2P40926 338 aaKnown RBP10.18□□□□□ -0.78
HMGB1-206ENST00000405805 ERVK-16P61578 105 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 OCIAD2Q56VL3 154 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 TUBD1Q9UJT1 453 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 TOX3O15405 576 aaPredicted RBP10.18□□□□□ -0.78
HMGB1-206ENST00000405805 PITX3O75364 302 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 NPY1RP25929 384 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 CKS1BP61024 79 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 RELBQ01201 579 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 SRSF4Q08170 494 aaKnown RBP10.18□□□□□ -0.78
HMGB1-206ENST00000405805 PCOLCEQ15113 449 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 C16orf54Q6UWD8 224 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 TMEM256Q8N2U0 113 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 OR4A16Q8NH70 328 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 TM2D1Q9BX74 207 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 OR2W1Q9Y3N9 320 aa10.18□□□□□ -0.78
HMGB1-206ENST00000405805 PMS2CLQ68D20 193 aa10.17□□□□□ -0.78
HMGB1-206ENST00000405805 C17orf82Q86X59 251 aaPredicted RBP10.17□□□□□ -0.78
HMGB1-206ENST00000405805 UBALD2Q8IYN6 164 aa10.17□□□□□ -0.78
HMGB1-206ENST00000405805 SSMEM1Q8WWF3 244 aa10.17□□□□□ -0.78
HMGB1-206ENST00000405805 CST9LQ9H4G1 147 aa10.17□□□□□ -0.78
HMGB1-206ENST00000405805 LIN7CQ9NUP9 197 aaKnown RBP10.17□□□□□ -0.78
HMGB1-206ENST00000405805 DPRXA6NFQ7 191 aa10.17□□□□□ -0.78
HMGB1-206ENST00000405805 LRRC3CA6NJW4 275 aa10.17□□□□□ -0.78
HMGB1-206ENST00000405805 HSPB1P04792 205 aaKnown RBP10.17□□□□□ -0.78
HMGB1-206ENST00000405805 CD55P08174 381 aa10.17□□□□□ -0.78
HMGB1-206ENST00000405805 OR5AL1P0C617 328 aa10.17□□□□□ -0.78
HMGB1-206ENST00000405805 TMEM106BQ9NUM4 274 aa10.17□□□□□ -0.78
HMGB1-206ENST00000405805 REV3LO60673 3130 aa10.17□□□□□ -0.78
HMGB1-206ENST00000405805 PPIAL4DF5H284 164 aa10.17□□□□□ -0.78
HMGB1-206ENST00000405805 SH2D1BO14796 132 aa10.17□□□□□ -0.78
HMGB1-206ENST00000405805 OR10J4P0C629 311 aa10.17□□□□□ -0.78
HMGB1-206ENST00000405805 COX5AP20674 150 aa10.17□□□□□ -0.78
HMGB1-206ENST00000405805 IL11RAQ14626 422 aa10.17□□□□□ -0.78
HMGB1-206ENST00000405805 ACSM6Q6P461 480 aa10.17□□□□□ -0.78
HMGB1-206ENST00000405805 ABHD5Q8WTS1 349 aa10.17□□□□□ -0.78
HMGB1-206ENST00000405805 GMPPAQ96IJ6 420 aaPredicted RBP10.17□□□□□ -0.78
HMGB1-206ENST00000405805 ABHD14BQ96IU4 210 aa10.17□□□□□ -0.78
HMGB1-206ENST00000405805 MKRN2OSH3BPM6 223 aa10.16□□□□□ -0.78
HMGB1-206ENST00000405805 FCGR3BO75015 233 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms