RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CX3CL1P78423 397 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 SMIM8Q96KF7 97 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 MMDQ15546 238 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 BEND2Q8NDZ0 799 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 C1RLQ9NZP8 487 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 YBX2Q9Y2T7 364 aaKnown RBP10.2□□□□□ -0.78
SYNPO-202ENST00000394243 NUDT10Q8NFP7 164 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 OR10J6PQ8NGY7 276 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 TRIP12Q14669 1992 aaPredicted RBP10.2□□□□□ -0.78
SYNPO-202ENST00000394243 PRDX2P32119 198 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 RPL31P62899 125 aaKnown RBP10.2□□□□□ -0.78
SYNPO-202ENST00000394243 TMEM170BQ5T4T1 132 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 SYT8Q8NBV8 401 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 OR4A5Q8NH83 315 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 DTX4Q9Y2E6 619 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 TRBV20OR9-2A0A075B6H5 130 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 F2RL2O00254 374 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 RRHO14718 337 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 HIST1H2BKO60814 126 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 IGKV1D-16P01601 117 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 HIST1H2BJP06899 126 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 HIST1H2BOP23527 126 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 HIST1H2BBP33778 126 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 HIST1H2BDP58876 126 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 HIST1H2BCP62807 126 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 HIST2H2BEQ16778 126 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.2□□□□□ -0.78
SYNPO-202ENST00000394243 BHLHA15Q7RTS1 189 aaPredicted RBP10.2□□□□□ -0.78
SYNPO-202ENST00000394243 HIST1H2BHQ93079 126 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 HIST1H2BNQ99877 126 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 HIST1H2BMQ99879 126 aa10.2□□□□□ -0.78
SYNPO-202ENST00000394243 K7N7A8 449 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 ID1P41134 155 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 FOXC2Q99958 501 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 PSMG3Q9BT73 122 aaPredicted RBP10.19□□□□□ -0.78
SYNPO-202ENST00000394243 HEATR5BQ9P2D3 2071 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 ZNF324BQ6AW86 544 aaPredicted RBP10.19□□□□□ -0.78
SYNPO-202ENST00000394243 GPBAR1Q8TDU6 330 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 ZNF385AQ96PM9 386 aaKnown RBP10.19□□□□□ -0.78
SYNPO-202ENST00000394243 AICDAQ9GZX7 198 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 A0A1W2PRS3 328 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 IL11RAQ14626 422 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 CEACAM21Q3KPI0 293 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 SFTA2Q6UW10 78 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 SDF2L1Q9HCN8 221 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 IGHV1OR21-1A0A087WYE8 117 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 A0A1W2PPV9 198 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 LINC00614P0C842 121 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 RPL27AP46776 148 aaKnown RBP10.19□□□□□ -0.78
SYNPO-202ENST00000394243 ZNF818PQ6ZRF7 136 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 TCF23Q7RTU1 214 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 ZNF257Q9Y2Q1 563 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 ABHD12Q8N2K0 398 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 MRPS16Q9Y3D3 137 aaKnown RBP10.19□□□□□ -0.78
SYNPO-202ENST00000394243 LOC390937A0A1W2PQ73 354 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 ADMP35318 185 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 RND2P52198 227 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 NUTF2P61970 127 aaKnown RBP10.19□□□□□ -0.78
SYNPO-202ENST00000394243 CYP2G1PQ6ZSU1 146 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 CLEC1BQ9P126 229 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 F5P12259 2224 aa10.19□□□□□ -0.78
SYNPO-202ENST00000394243 TRAV14DV4A0A0A6YYC5 116 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 TRAV17A0A0B4J275 112 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 WISP3O95389 354 aaPredicted RBP10.18□□□□□ -0.78
SYNPO-202ENST00000394243 GOLT1AQ6ZVE7 132 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 STPG3Q8N7X2 389 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 OR51G1Q8NGK1 321 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 GPR82Q96P67 336 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 NABP2Q9BQ15 211 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 IGKV3D-11A0A0A0MRZ8 115 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 TMEM50AO95807 157 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 OR2H2O95918 312 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 IGKV3-11P04433 115 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 SPRED2Q7Z698 418 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 OR13C6PQ8NH95 151 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 TMEM170AQ8WVE7 144 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 ZNF576Q9H609 170 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 TOPAZ1Q8N9V7 1692 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 SCO2A0A1W2PP80 73 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 ZNHIT1O43257 154 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 CLDND2Q8NHS1 167 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 TMEM106BQ9NUM4 274 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 SEC16AO15027 2179 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 RNF222A6NCQ9 220 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 MKRN2OSH3BPM6 223 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 MRAP2Q96G30 205 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 GEMIN7Q9H840 131 aaKnown RBP10.18□□□□□ -0.78
SYNPO-202ENST00000394243 DLEU1O43261 78 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 MOB4Q9Y3A3 225 aa10.18□□□□□ -0.78
SYNPO-202ENST00000394243 SSPNQ14714 243 aa10.17□□□□□ -0.78
SYNPO-202ENST00000394243 TMEM52Q8NDY8 209 aa10.17□□□□□ -0.78
SYNPO-202ENST00000394243 RAB1CQ92928 201 aa10.17□□□□□ -0.78
SYNPO-202ENST00000394243 MARS2Q96GW9 593 aaKnown RBP10.17□□□□□ -0.78
SYNPO-202ENST00000394243 NHP2Q9NX24 153 aaKnown RBP10.17□□□□□ -0.78
SYNPO-202ENST00000394243 PGPEP1LA6NFU8 196 aa10.17□□□□□ -0.78
SYNPO-202ENST00000394243 RPL8P62917 257 aaKnown RBP10.17□□□□□ -0.78
SYNPO-202ENST00000394243 ACSF3Q4G176 576 aaPredicted RBP10.17□□□□□ -0.78
SYNPO-202ENST00000394243 PRELID3AQ96N28 172 aa10.17□□□□□ -0.78
SYNPO-202ENST00000394243 SSBP4Q9BWG4 385 aaPredicted RBP10.17□□□□□ -0.78
SYNPO-202ENST00000394243 SHISA3A0PJX4 238 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms