RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 HPRT1P00492 218 aa12.63□□□□□ -0.39
LIMS1-202ENST00000338045 KRASP01116 189 aa12.63□□□□□ -0.39
LIMS1-202ENST00000338045 G6PCP35575 357 aa12.63□□□□□ -0.39
LIMS1-202ENST00000338045 P2RY1P47900 373 aa12.63□□□□□ -0.39
LIMS1-202ENST00000338045 ZNF137PP52743 207 aa12.63□□□□□ -0.39
LIMS1-202ENST00000338045 SSBP3Q9BWW4 388 aaPredicted RBP12.63□□□□□ -0.39
LIMS1-202ENST00000338045 TMEM133Q9H2Q1 129 aa12.63□□□□□ -0.39
LIMS1-202ENST00000338045 IFNA7P01567 189 aa12.63□□□□□ -0.39
LIMS1-202ENST00000338045 IGHV4-39P01824 125 aa12.63□□□□□ -0.39
LIMS1-202ENST00000338045 MMP9P14780 707 aa12.63□□□□□ -0.39
LIMS1-202ENST00000338045 RPL12P30050 165 aaKnown RBP12.63□□□□□ -0.39
LIMS1-202ENST00000338045 EXOSC2Q13868 293 aaKnown RBP12.63□□□□□ -0.39
LIMS1-202ENST00000338045 MIDNQ504T8 468 aa12.63□□□□□ -0.39
LIMS1-202ENST00000338045 FAM71F2Q6NXP2 309 aa12.63□□□□□ -0.39
LIMS1-202ENST00000338045 ZNF383Q8NA42 475 aa12.63□□□□□ -0.39
LIMS1-202ENST00000338045 OR9G1Q8NH87 305 aa12.63□□□□□ -0.39
LIMS1-202ENST00000338045 CCL19Q99731 98 aa12.63□□□□□ -0.39
LIMS1-202ENST00000338045 LIPFP07098 398 aa12.62□□□□□ -0.39
LIMS1-202ENST00000338045 GPR157Q5UAW9 335 aa12.62□□□□□ -0.39
LIMS1-202ENST00000338045 ABHD12Q8N2K0 398 aa12.62□□□□□ -0.39
LIMS1-202ENST00000338045 ZNF525Q8N782 197 aa12.62□□□□□ -0.39
LIMS1-202ENST00000338045 TNFRSF14Q92956 283 aa12.62□□□□□ -0.39
LIMS1-202ENST00000338045 ST6GALNAC6Q969X2 333 aa12.62□□□□□ -0.39
LIMS1-202ENST00000338045 MARCH11A6NNE9 402 aa12.61□□□□□ -0.39
LIMS1-202ENST00000338045 FAM90A26D6RGX4 464 aa12.61□□□□□ -0.39
LIMS1-202ENST00000338045 CT45A6P0DMU7 189 aa12.61□□□□□ -0.39
LIMS1-202ENST00000338045 CT45A5P0DMU8 189 aa12.61□□□□□ -0.39
LIMS1-202ENST00000338045 CT45A7P0DMV0 189 aa12.61□□□□□ -0.39
LIMS1-202ENST00000338045 PVALBP20472 110 aaPredicted RBP12.61□□□□□ -0.39
LIMS1-202ENST00000338045 OR4S2Q8NH73 311 aa12.61□□□□□ -0.39
LIMS1-202ENST00000338045 MARC2Q969Z3 335 aa12.61□□□□□ -0.39
LIMS1-202ENST00000338045 TMEM186Q96B77 213 aa12.61□□□□□ -0.39
LIMS1-202ENST00000338045 R3HDM4Q96D70 268 aa12.61□□□□□ -0.39
LIMS1-202ENST00000338045 CYTL1Q9NRR1 136 aa12.61□□□□□ -0.39
LIMS1-202ENST00000338045 AKAP6Q13023 2319 aa12.61□□□□□ -0.39
LIMS1-202ENST00000338045 LOC105371242A0A075B767 164 aa12.61□□□□□ -0.39
LIMS1-202ENST00000338045 IGHV2-5P01817 119 aa12.61□□□□□ -0.39
LIMS1-202ENST00000338045 COX6B1P14854 86 aa12.61□□□□□ -0.39
LIMS1-202ENST00000338045 UBA52P62987 128 aaKnown RBP12.61□□□□□ -0.39
LIMS1-202ENST00000338045 SP5Q6BEB4 398 aaPredicted RBP12.61□□□□□ -0.39
LIMS1-202ENST00000338045 OR10X1Q8NGY0 326 aa12.61□□□□□ -0.39
LIMS1-202ENST00000338045 ST8SIA2Q92186 375 aa12.61□□□□□ -0.39
LIMS1-202ENST00000338045 MAGT1Q9H0U3 335 aa12.61□□□□□ -0.39
LIMS1-202ENST00000338045 IGHV2-26A0A0B4J1V2 119 aa12.6□□□□□ -0.39
LIMS1-202ENST00000338045 hCG_1809904A0A1W2PP81 198 aa12.6□□□□□ -0.39
LIMS1-202ENST00000338045 A0A1W2PPE2 198 aa12.6□□□□□ -0.39
LIMS1-202ENST00000338045 A0A1W2PR64 198 aa12.6□□□□□ -0.39
LIMS1-202ENST00000338045 A0A1W2PRV1 198 aa12.6□□□□□ -0.39
LIMS1-202ENST00000338045 FAM90A9PA6NNJ1 464 aa12.6□□□□□ -0.39
LIMS1-202ENST00000338045 CHST1O43916 411 aa12.6□□□□□ -0.39
LIMS1-202ENST00000338045 SSSCA1O60232 199 aa12.6□□□□□ -0.39
LIMS1-202ENST00000338045 GPR137BO60478 399 aa12.6□□□□□ -0.39
LIMS1-202ENST00000338045 TMEM50AO95807 157 aa12.6□□□□□ -0.39
LIMS1-202ENST00000338045 IGLV1-47P01700 117 aa12.6□□□□□ -0.39
LIMS1-202ENST00000338045 H2BFWTQ7Z2G1 175 aa12.6□□□□□ -0.39
LIMS1-202ENST00000338045 OR2C3Q8N628 320 aa12.6□□□□□ -0.39
LIMS1-202ENST00000338045 STOML3Q8TAV4 291 aa12.6□□□□□ -0.39
LIMS1-202ENST00000338045 LRRC20Q8TCA0 184 aa12.6□□□□□ -0.39
LIMS1-202ENST00000338045 ZNF471Q9BX82 626 aaPredicted RBP12.6□□□□□ -0.39
LIMS1-202ENST00000338045 BPESC1Q9GZL8 116 aa12.6□□□□□ -0.39
LIMS1-202ENST00000338045 UBQLN2Q9UHD9 624 aa12.6□□□□□ -0.39
LIMS1-202ENST00000338045 CBY1Q9Y3M2 126 aa12.6□□□□□ -0.39
LIMS1-202ENST00000338045 WRBO00258 174 aa12.59□□□□□ -0.39
LIMS1-202ENST00000338045 TAAR5O14804 337 aa12.59□□□□□ -0.39
LIMS1-202ENST00000338045 NXPH3O95157 252 aa12.59□□□□□ -0.39
LIMS1-202ENST00000338045 SPDEFO95238 335 aa12.59□□□□□ -0.39
LIMS1-202ENST00000338045 NQO2P16083 231 aa12.59□□□□□ -0.39
LIMS1-202ENST00000338045 PDLIM4P50479 330 aa12.59□□□□□ -0.39
LIMS1-202ENST00000338045 PAX9P55771 341 aa12.59□□□□□ -0.39
LIMS1-202ENST00000338045 AARDQ4LEZ3 155 aa12.59□□□□□ -0.39
LIMS1-202ENST00000338045 DHRS7BQ6IAN0 325 aaPredicted RBP12.59□□□□□ -0.39
LIMS1-202ENST00000338045 C16orf54Q6UWD8 224 aa12.59□□□□□ -0.39
LIMS1-202ENST00000338045 ZNF295-AS1Q8N0V1 137 aa12.59□□□□□ -0.39
LIMS1-202ENST00000338045 Q8N7P7 452 aa12.59□□□□□ -0.39
LIMS1-202ENST00000338045 RAB40CQ96S21 281 aa12.59□□□□□ -0.39
LIMS1-202ENST00000338045 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.59□□□□□ -0.39
LIMS1-202ENST00000338045 LYRM2Q9NU23 88 aaPredicted RBP12.59□□□□□ -0.39
LIMS1-202ENST00000338045 HSPB7Q9UBY9 170 aa12.59□□□□□ -0.39
LIMS1-202ENST00000338045 M0R1W7 72 aa12.59□□□□□ -0.39
LIMS1-202ENST00000338045 SYNGR2O43760 224 aa12.59□□□□□ -0.39
LIMS1-202ENST00000338045 POU2AF1Q16633 256 aa12.59□□□□□ -0.39
LIMS1-202ENST00000338045 BEND2Q8NDZ0 799 aa12.59□□□□□ -0.39
LIMS1-202ENST00000338045 OR5AN1Q8NGI8 311 aa12.59□□□□□ -0.39
LIMS1-202ENST00000338045 MRPL20Q9BYC9 149 aaKnown RBP12.59□□□□□ -0.39
LIMS1-202ENST00000338045 A1L4Q6 167 aa12.58□□□□□ -0.4
LIMS1-202ENST00000338045 A8MXK9 166 aa12.58□□□□□ -0.4
LIMS1-202ENST00000338045 HTR2BP41595 481 aa12.58□□□□□ -0.4
LIMS1-202ENST00000338045 LMO4P61968 165 aa12.58□□□□□ -0.4
LIMS1-202ENST00000338045 VAMP2P63027 116 aa12.58□□□□□ -0.4
LIMS1-202ENST00000338045 TNFRSF9Q07011 255 aa12.58□□□□□ -0.4
LIMS1-202ENST00000338045 SCARB1Q8WTV0 552 aa12.58□□□□□ -0.4
LIMS1-202ENST00000338045 PHYHIPLQ96FC7 376 aa12.58□□□□□ -0.4
LIMS1-202ENST00000338045 TMEM68Q96MH6 324 aa12.58□□□□□ -0.4
LIMS1-202ENST00000338045 CLEC7AQ9BXN2 247 aa12.58□□□□□ -0.4
LIMS1-202ENST00000338045 SLC35D1Q9NTN3 355 aa12.58□□□□□ -0.4
LIMS1-202ENST00000338045 ONECUT1Q9UBC0 465 aa12.58□□□□□ -0.4
LIMS1-202ENST00000338045 FBXL17Q9UF56 701 aa12.58□□□□□ -0.4
LIMS1-202ENST00000338045 WSB1Q9Y6I7 421 aa12.58□□□□□ -0.4
LIMS1-202ENST00000338045 FAM208BQ5VWN6 2430 aa12.57□□□□□ -0.4
LIMS1-202ENST00000338045 LRRK2Q5S007 2527 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms