RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 OR8B2Q96RD0 313 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 SPSB2Q99619 263 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 AKIRIN1Q9H9L7 192 aaPredicted RBP9.89□□□□□ -0.83
VPS39-201ENST00000318006 TINAGQ9UJW2 476 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 LAMTOR2Q9Y2Q5 125 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 A0A1B0GTI1 187 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 PRRX1P54821 245 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 FGFRL1Q8N441 504 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 CCL17Q92583 94 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 HIST1H4GQ99525 98 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 CLEC5AQ9NY25 188 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 TBL2Q9Y4P3 447 aaKnown RBP9.89□□□□□ -0.83
VPS39-201ENST00000318006 OR51B2Q9Y5P1 312 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 ANK1P16157 1881 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 IGKV1D-42A0A075B6H8 117 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 M0QZ24 198 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 S1PR2O95136 353 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 ARL14EPLP0DKL9 152 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 SRSF3P84103 164 aaKnown RBP9.88□□□□□ -0.83
VPS39-201ENST00000318006 WNT10AQ9GZT5 417 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 SDF2L1Q9HCN8 221 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 FAM206AQ9NX38 181 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 HIST1H2BKO60814 126 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 HIST1H2BJP06899 126 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 LINC00869P0C866 280 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 HIST1H2BOP23527 126 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 HIST1H2BBP33778 126 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 HIST1H2BDP58876 126 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 HIST1H2BCP62807 126 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 HIST2H2BEQ16778 126 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.88□□□□□ -0.83
VPS39-201ENST00000318006 ZNF841Q6ZN19 808 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 HIST1H2BHQ93079 126 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 HARBI1Q96MB7 349 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 HIST1H2BNQ99877 126 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 HIST1H2BMQ99879 126 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 ALPK2Q86TB3 2170 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 KLF4O43474 513 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 GNG7O60262 68 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 IGKV3-11P04433 115 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 CRYBA2P53672 197 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 ASCL3Q9NQ33 180 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 G6PC2Q9NQR9 355 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 COA4Q9NYJ1 87 aa9.88□□□□□ -0.83
VPS39-201ENST00000318006 A1L4Q6 167 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 NUDT3O95989 172 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 COX6CP09669 75 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 SMIM13P0DJ93 91 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 GNB2P62879 340 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 INO80CQ6PI98 192 aaPredicted RBP9.87□□□□□ -0.83
VPS39-201ENST00000318006 ZNF502Q8TBZ5 544 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 GRAMD2BQ96HH9 432 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 COLCA2A8K830 154 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 F8VVB4 439 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 F8VWA3 439 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 HYPMO75409 117 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 OR1N2Q8NGR9 330 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 Q96M66 194 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 FAM90A27PA6NNH2 459 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 LIPFP07098 398 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 SELENOTP62341 195 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 HOXA4Q00056 320 aaPredicted RBP9.87□□□□□ -0.83
VPS39-201ENST00000318006 UNC119Q13432 240 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 DGAT2L7PQ6IED9 249 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 SLC25A47Q6Q0C1 308 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 ZNF236Q9UL36 1845 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 TMEM210A6NLX4 147 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 AREGP15514 252 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 CRYBB3P26998 211 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 CKS2P33552 79 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 BMI1P35226 326 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 LTBRP36941 435 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 PSG4Q00888 419 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 FAM222BQ8WU58 562 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 TMEM170AQ8WVE7 144 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 TMEM74BQ9NUR3 256 aa9.87□□□□□ -0.83
VPS39-201ENST00000318006 AMMECR1Q9Y4X0 333 aaPredicted RBP9.87□□□□□ -0.83
VPS39-201ENST00000318006 TMEM189A5PLL7 270 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 EFEMP2O95967 443 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 ARF6P62330 175 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 CEACAM21Q3KPI0 293 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 NR2C2APQ86WQ0 139 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 ST6GALNAC3Q8NDV1 305 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 CLDND2Q8NHS1 167 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 SLC25A40Q8TBP6 338 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 PATJQ8NI35 1801 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 GVINP1Q7Z2Y8 2422 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 TWIST1Q15672 202 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 SAMD13Q5VXD3 122 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 MDP1Q86V88 176 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 PGLYRP4Q96LB8 373 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 ZNF488Q96MN9 340 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 HIGD1AQ9Y241 93 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 F11RQ9Y624 299 aaKnown RBP9.86□□□□□ -0.83
VPS39-201ENST00000318006 AGFG2O95081 481 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 NUBP1P53384 320 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 LY6G6FQ5SQ64 297 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 HEPN1Q6WQI6 88 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 ZNF645Q8N7E2 425 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 IL36BQ9NZH7 164 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms