RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 FAM3BP58499 235 aaPredicted RBP17.8■□□□□ 0.44
TRIM28-201ENST00000253024 DUX4L9Q6RFH8 374 aaPredicted RBP17.8■□□□□ 0.44
TRIM28-201ENST00000253024 RPRMLQ8N4K4 120 aa17.8■□□□□ 0.44
TRIM28-201ENST00000253024 OR51M1Q9H341 326 aa17.8■□□□□ 0.44
TRIM28-201ENST00000253024 OR9G9P0C7N8 305 aa17.79■□□□□ 0.44
TRIM28-201ENST00000253024 SP5Q6BEB4 398 aaPredicted RBP17.79■□□□□ 0.44
TRIM28-201ENST00000253024 TMEM37Q8WXS4 190 aa17.79■□□□□ 0.44
TRIM28-201ENST00000253024 GMPPAQ96IJ6 420 aaPredicted RBP17.79■□□□□ 0.44
TRIM28-201ENST00000253024 IFNA10P01566 189 aa17.79■□□□□ 0.44
TRIM28-201ENST00000253024 MEF2BQ02080 365 aaPredicted RBP17.79■□□□□ 0.44
TRIM28-201ENST00000253024 TMEM178AQ8NBL3 297 aa17.79■□□□□ 0.44
TRIM28-201ENST00000253024 MALSU1Q96EH3 234 aa17.79■□□□□ 0.44
TRIM28-201ENST00000253024 PCGF1Q9BSM1 259 aa17.79■□□□□ 0.44
TRIM28-201ENST00000253024 PARLQ9H300 379 aa17.79■□□□□ 0.44
TRIM28-201ENST00000253024 COL27A1Q8IZC6 1860 aaPredicted RBP17.79■□□□□ 0.44
TRIM28-201ENST00000253024 MARCH11A6NNE9 402 aa17.79■□□□□ 0.44
TRIM28-201ENST00000253024 M0R296 226 aa17.79■□□□□ 0.44
TRIM28-201ENST00000253024 ACP7Q6ZNF0 438 aa17.79■□□□□ 0.44
TRIM28-201ENST00000253024 CD177Q8N6Q3 437 aa17.79■□□□□ 0.44
TRIM28-201ENST00000253024 DEFB124Q8NES8 71 aa17.79■□□□□ 0.44
TRIM28-201ENST00000253024 ZNRD1Q9P1U0 126 aa17.79■□□□□ 0.44
TRIM28-201ENST00000253024 WASF3Q9UPY6 502 aa17.79■□□□□ 0.44
TRIM28-201ENST00000253024 SVEP1Q4LDE5 3571 aa17.78■□□□□ 0.44
TRIM28-201ENST00000253024 SPRY3O43610 288 aa17.78■□□□□ 0.44
TRIM28-201ENST00000253024 MSMPQ1L6U9 139 aa17.78■□□□□ 0.44
TRIM28-201ENST00000253024 ABHD12Q8N2K0 398 aa17.78■□□□□ 0.44
TRIM28-201ENST00000253024 ZNF709Q8N972 641 aa17.78■□□□□ 0.44
TRIM28-201ENST00000253024 SSMEM1Q8WWF3 244 aa17.78■□□□□ 0.44
TRIM28-201ENST00000253024 CTNNBIP1Q9NSA3 81 aaPredicted RBP17.78■□□□□ 0.44
TRIM28-201ENST00000253024 M0R1X1 148 aa17.78■□□□□ 0.44
TRIM28-201ENST00000253024 GZMHP20718 246 aa17.78■□□□□ 0.44
TRIM28-201ENST00000253024 KIR2DL2P43627 348 aaPredicted RBP17.78■□□□□ 0.44
TRIM28-201ENST00000253024 UNQ6494/PRO21346Q6UXR6 183 aa17.78■□□□□ 0.44
TRIM28-201ENST00000253024 MOB1BQ7L9L4 216 aa17.78■□□□□ 0.44
TRIM28-201ENST00000253024 CEP295Q9C0D2 2601 aa17.77■□□□□ 0.44
TRIM28-201ENST00000253024 GCH1P30793 250 aa17.77■□□□□ 0.44
TRIM28-201ENST00000253024 GAMTQ14353 236 aa17.77■□□□□ 0.44
TRIM28-201ENST00000253024 P2RY6Q15077 328 aa17.77■□□□□ 0.44
TRIM28-201ENST00000253024 MRGPRGQ86SM5 289 aa17.77■□□□□ 0.44
TRIM28-201ENST00000253024 Q8IYB0 196 aa17.77■□□□□ 0.44
TRIM28-201ENST00000253024 KDF1Q8NAX2 398 aaPredicted RBP17.77■□□□□ 0.44
TRIM28-201ENST00000253024 OR8G5Q8NG78 346 aa17.77■□□□□ 0.44
TRIM28-201ENST00000253024 FAM122AQ96E09 287 aa17.77■□□□□ 0.44
TRIM28-201ENST00000253024 SMDT1Q9H4I9 107 aa17.77■□□□□ 0.44
TRIM28-201ENST00000253024 CYB5R3P00387 301 aaPredicted RBP17.77■□□□□ 0.44
TRIM28-201ENST00000253024 ATP5G3P48201 142 aa17.77■□□□□ 0.44
TRIM28-201ENST00000253024 TMEM14EPQ6UXP3 125 aa17.77■□□□□ 0.44
TRIM28-201ENST00000253024 TCEAL7Q9BRU2 100 aa17.77■□□□□ 0.44
TRIM28-201ENST00000253024 WIPI2Q9Y4P8 454 aa17.77■□□□□ 0.44
TRIM28-201ENST00000253024 CATR1Q13166 79 aa17.76■□□□□ 0.43
TRIM28-201ENST00000253024 MSMO1Q15800 293 aa17.76■□□□□ 0.43
TRIM28-201ENST00000253024 DEFB109BQ30KR1 87 aa17.76■□□□□ 0.43
TRIM28-201ENST00000253024 A0A1B0GUS0 222 aa17.76■□□□□ 0.43
TRIM28-201ENST00000253024 OOEPA6NGQ2 149 aa17.76■□□□□ 0.43
TRIM28-201ENST00000253024 IQCF6A8MYZ5 107 aa17.76■□□□□ 0.43
TRIM28-201ENST00000253024 PSMB3P49720 205 aa17.76■□□□□ 0.43
TRIM28-201ENST00000253024 TRIP6Q15654 476 aaKnown RBP17.76■□□□□ 0.43
TRIM28-201ENST00000253024 NPCDR1Q9BY65 106 aa17.76■□□□□ 0.43
TRIM28-201ENST00000253024 IGHV2-70P01814 119 aa17.76■□□□□ 0.43
TRIM28-201ENST00000253024 GPR12P47775 334 aa17.76■□□□□ 0.43
TRIM28-201ENST00000253024 TMEM241Q24JQ0 296 aa17.76■□□□□ 0.43
TRIM28-201ENST00000253024 BSXQ3C1V8 233 aa17.76■□□□□ 0.43
TRIM28-201ENST00000253024 PRAMEF5Q5TYX0 476 aa17.76■□□□□ 0.43
TRIM28-201ENST00000253024 WDR31Q8NA23 367 aa17.76■□□□□ 0.43
TRIM28-201ENST00000253024 MBD3L1Q8WWY6 194 aa17.76■□□□□ 0.43
TRIM28-201ENST00000253024 R3HDM4Q96D70 268 aa17.76■□□□□ 0.43
TRIM28-201ENST00000253024 HSPB7Q9UBY9 170 aa17.76■□□□□ 0.43
TRIM28-201ENST00000253024 PLXNB1O43157 2135 aa17.75■□□□□ 0.43
TRIM28-201ENST00000253024 SLC31A2O15432 143 aa17.75■□□□□ 0.43
TRIM28-201ENST00000253024 PROP1O75360 226 aa17.75■□□□□ 0.43
TRIM28-201ENST00000253024 SLC25A6P12236 298 aa17.75■□□□□ 0.43
TRIM28-201ENST00000253024 RPL23P62829 140 aaKnown RBP17.75■□□□□ 0.43
TRIM28-201ENST00000253024 Q6ZT83 130 aa17.75■□□□□ 0.43
TRIM28-201ENST00000253024 ZDHHC11Q9H8X9 412 aa17.75■□□□□ 0.43
TRIM28-201ENST00000253024 HEYLQ9NQ87 328 aaPredicted RBP17.75■□□□□ 0.43
TRIM28-201ENST00000253024 A0A087WWC5 75 aa17.75■□□□□ 0.43
TRIM28-201ENST00000253024 HIST3H2BBQ8N257 126 aa17.75■□□□□ 0.43
TRIM28-201ENST00000253024 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP17.74■□□□□ 0.43
TRIM28-201ENST00000253024 RNF212BA8MTL3 300 aa17.74■□□□□ 0.43
TRIM28-201ENST00000253024 H7BYZ3 331 aa17.74■□□□□ 0.43
TRIM28-201ENST00000253024 RRHO14718 337 aa17.74■□□□□ 0.43
TRIM28-201ENST00000253024 S100A12P80511 92 aa17.74■□□□□ 0.43
TRIM28-201ENST00000253024 SERF2P84101 59 aa17.74■□□□□ 0.43
TRIM28-201ENST00000253024 TGIF2LYQ8IUE0 185 aa17.74■□□□□ 0.43
TRIM28-201ENST00000253024 OR4X1Q8NH49 305 aa17.74■□□□□ 0.43
TRIM28-201ENST00000253024 SNRNP40Q96DI7 357 aaKnown RBP17.74■□□□□ 0.43
TRIM28-201ENST00000253024 APC2O95996 2303 aa17.74■□□□□ 0.43
TRIM28-201ENST00000253024 M0R1B8 84 aa17.74■□□□□ 0.43
TRIM28-201ENST00000253024 IFNA1P01562 189 aa17.74■□□□□ 0.43
TRIM28-201ENST00000253024 SNRPCP09234 159 aaKnown RBP17.74■□□□□ 0.43
TRIM28-201ENST00000253024 GALR1P47211 349 aa17.74■□□□□ 0.43
TRIM28-201ENST00000253024 ZNF134P52741 427 aa17.74■□□□□ 0.43
TRIM28-201ENST00000253024 MOGAT3Q86VF5 341 aa17.74■□□□□ 0.43
TRIM28-201ENST00000253024 C1QL4Q86Z23 238 aa17.74■□□□□ 0.43
TRIM28-201ENST00000253024 SNIP1Q8TAD8 396 aaKnown RBP17.74■□□□□ 0.43
TRIM28-201ENST00000253024 PRDX2P32119 198 aa17.73■□□□□ 0.43
TRIM28-201ENST00000253024 GNG10P50151 68 aa17.73■□□□□ 0.43
TRIM28-201ENST00000253024 OR13D1Q8NGV5 346 aa17.73■□□□□ 0.43
TRIM28-201ENST00000253024 POM121Q96HA1 1249 aa17.73■□□□□ 0.43
TRIM28-201ENST00000253024 PSMG3Q9BT73 122 aaPredicted RBP17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms