RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 MBNL2Q5VZF2 373 aaKnown RBP10.66□□□□□ -0.7
LINC00540-203ENST00000631321 IGFL2Q6UWQ7 119 aa10.66□□□□□ -0.7
LINC00540-203ENST00000631321 ABHD5Q8WTS1 349 aa10.66□□□□□ -0.7
LINC00540-203ENST00000631321 FAM216AQ8WUB2 273 aa10.66□□□□□ -0.7
LINC00540-203ENST00000631321 GAR1Q9NY12 217 aaKnown RBP10.66□□□□□ -0.7
LINC00540-203ENST00000631321 METRNQ9UJH8 293 aa10.66□□□□□ -0.7
LINC00540-203ENST00000631321 NCOR1O75376 2440 aa10.66□□□□□ -0.7
LINC00540-203ENST00000631321 OR5H1A6NKK0 313 aa10.65□□□□□ -0.7
LINC00540-203ENST00000631321 LINC00473A8K010 186 aa10.65□□□□□ -0.7
LINC00540-203ENST00000631321 TIMM8AO60220 97 aaPredicted RBP10.65□□□□□ -0.7
LINC00540-203ENST00000631321 ADH4P08319 380 aa10.65□□□□□ -0.7
LINC00540-203ENST00000631321 CECR9P0C854 216 aa10.65□□□□□ -0.7
LINC00540-203ENST00000631321 SSTR5P35346 364 aa10.65□□□□□ -0.7
LINC00540-203ENST00000631321 PSMB3P49720 205 aa10.65□□□□□ -0.7
LINC00540-203ENST00000631321 HOXA4Q00056 320 aaPredicted RBP10.65□□□□□ -0.7
LINC00540-203ENST00000631321 VWA1Q6PCB0 445 aa10.65□□□□□ -0.7
LINC00540-203ENST00000631321 H2BFWTQ7Z2G1 175 aa10.65□□□□□ -0.7
LINC00540-203ENST00000631321 CNEP1R1Q8N9A8 125 aa10.65□□□□□ -0.7
LINC00540-203ENST00000631321 C9orf106Q8NAJ2 232 aa10.65□□□□□ -0.7
LINC00540-203ENST00000631321 EDARADDQ8WWZ3 215 aa10.65□□□□□ -0.7
LINC00540-203ENST00000631321 MANBALQ9NQG1 85 aa10.65□□□□□ -0.7
LINC00540-203ENST00000631321 S100A2P29034 98 aa10.65□□□□□ -0.71
LINC00540-203ENST00000631321 TMEM241Q24JQ0 296 aa10.65□□□□□ -0.71
LINC00540-203ENST00000631321 ZNF718Q3SXZ3 478 aa10.65□□□□□ -0.71
LINC00540-203ENST00000631321 BTNL3Q6UXE8 466 aa10.65□□□□□ -0.71
LINC00540-203ENST00000631321 C1orf174Q8IYL3 243 aa10.65□□□□□ -0.71
LINC00540-203ENST00000631321 HIST3H2BBQ8N257 126 aa10.65□□□□□ -0.71
LINC00540-203ENST00000631321 OR10G9Q8NGN4 311 aa10.65□□□□□ -0.71
LINC00540-203ENST00000631321 OR10G7Q8NGN6 311 aa10.65□□□□□ -0.71
LINC00540-203ENST00000631321 ZDHHC16Q969W1 377 aa10.65□□□□□ -0.71
LINC00540-203ENST00000631321 SSX3Q99909 188 aa10.65□□□□□ -0.71
LINC00540-203ENST00000631321 SMIM7Q9BQ49 75 aa10.65□□□□□ -0.71
LINC00540-203ENST00000631321 PYGO2Q9BRQ0 406 aa10.65□□□□□ -0.71
LINC00540-203ENST00000631321 NPCDR1Q9BY65 106 aa10.65□□□□□ -0.71
LINC00540-203ENST00000631321 ACTR3CQ9C0K3 210 aaPredicted RBP10.65□□□□□ -0.71
LINC00540-203ENST00000631321 SLC25A22Q9H936 323 aa10.65□□□□□ -0.71
LINC00540-203ENST00000631321 FAM90A9PA6NNJ1 464 aa10.64□□□□□ -0.71
LINC00540-203ENST00000631321 LY86O95711 162 aa10.64□□□□□ -0.71
LINC00540-203ENST00000631321 TFF1P04155 84 aa10.64□□□□□ -0.71
LINC00540-203ENST00000631321 TRGC1P0CF51 173 aa10.64□□□□□ -0.71
LINC00540-203ENST00000631321 NKX6-1P78426 367 aaPredicted RBP10.64□□□□□ -0.71
LINC00540-203ENST00000631321 PYY3Q5JQD4 70 aa10.64□□□□□ -0.71
LINC00540-203ENST00000631321 FFAR4Q5NUL3 377 aa10.64□□□□□ -0.71
LINC00540-203ENST00000631321 NCR3LG1Q68D85 454 aa10.64□□□□□ -0.71
LINC00540-203ENST00000631321 CD177Q8N6Q3 437 aa10.64□□□□□ -0.71
LINC00540-203ENST00000631321 FRZBQ92765 325 aa10.64□□□□□ -0.71
LINC00540-203ENST00000631321 DIRC2Q96SL1 478 aa10.64□□□□□ -0.71
LINC00540-203ENST00000631321 PLSCR4Q9NRQ2 329 aa10.64□□□□□ -0.71
LINC00540-203ENST00000631321 DMRT1Q9Y5R6 373 aa10.64□□□□□ -0.71
LINC00540-203ENST00000631321 IGHV2OR16-5A0A0B4J2B6 119 aa10.64□□□□□ -0.71
LINC00540-203ENST00000631321 PRR33A8MZF0 331 aa10.64□□□□□ -0.71
LINC00540-203ENST00000631321 PPP1R2P9O14990 202 aa10.64□□□□□ -0.71
LINC00540-203ENST00000631321 SPINT2O43291 252 aa10.64□□□□□ -0.71
LINC00540-203ENST00000631321 PFN1P07737 140 aaKnown RBP10.64□□□□□ -0.71
LINC00540-203ENST00000631321 TFF3Q07654 80 aa10.64□□□□□ -0.71
LINC00540-203ENST00000631321 MZT1Q08AG7 82 aa10.64□□□□□ -0.71
LINC00540-203ENST00000631321 FOXF2Q12947 444 aa10.64□□□□□ -0.71
LINC00540-203ENST00000631321 Q3ZCU0 254 aa10.64□□□□□ -0.71
LINC00540-203ENST00000631321 UFSP2Q9NUQ7 469 aa10.64□□□□□ -0.71
LINC00540-203ENST00000631321 WASF3Q9UPY6 502 aa10.64□□□□□ -0.71
LINC00540-203ENST00000631321 PSG11Q9UQ72 335 aa10.64□□□□□ -0.71
LINC00540-203ENST00000631321 MARCH11A6NNE9 402 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 C15orf62A8K5M9 175 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 ST8SIA5O15466 376 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 TMEM249Q2WGJ8 235 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 DNLZQ5SXM8 178 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 FAM169BQ8N8A8 192 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 FDCSPQ8NFU4 85 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 MSL2Q9HCI7 577 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 CELSR3Q9NYQ7 3312 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 KIAA2026Q5HYC2 2103 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 NKX2-8O15522 239 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 SOD3P08294 240 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 GCH1P30793 250 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 PRDX2P32119 198 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 FABP6P51161 128 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 RPL23P62829 140 aaKnown RBP10.63□□□□□ -0.71
LINC00540-203ENST00000631321 CR1LQ2VPA4 569 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 BSXQ3C1V8 233 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 FAM180AQ6UWF9 173 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 FAM90A1Q86YD7 464 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 Q8N7P7 452 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 TPRX1Q8N7U7 411 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 ZNF709Q8N972 641 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 RAB24Q969Q5 203 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 SARAFQ96BY9 339 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 SRD5A3Q9H8P0 318 aa10.63□□□□□ -0.71
LINC00540-203ENST00000631321 GTF3C1Q12789 2109 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 USF3Q68DE3 2245 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 IGHV3-43A0A0B4J1X8 118 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 IGHV1-18A0A0C4DH31 117 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 C17orf112F2Z3M2 114 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 IGHV3-43DP0DP04 118 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 DUTP33316 252 aaKnown RBP10.62□□□□□ -0.71
LINC00540-203ENST00000631321 PLA2G5P39877 138 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 CCL11P51671 97 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 TRIP6Q15654 476 aaKnown RBP10.62□□□□□ -0.71
LINC00540-203ENST00000631321 ADIRFQ15847 76 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 C16orf82Q7Z2V1 217 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 RFESDQ8TAC1 157 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms