RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 CREBBPQ92793 2442 aa13.08□□□□□ -0.31
CPSF1-213ENST00000620219 DBX1A6NMT0 343 aa13.08□□□□□ -0.32
CPSF1-213ENST00000620219 RAMP3O60896 148 aa13.08□□□□□ -0.32
CPSF1-213ENST00000620219 C1QL1O75973 258 aa13.08□□□□□ -0.32
CPSF1-213ENST00000620219 STOML3Q8TAV4 291 aa13.08□□□□□ -0.32
CPSF1-213ENST00000620219 COMMD5Q9GZQ3 224 aa13.08□□□□□ -0.32
CPSF1-213ENST00000620219 FAM212BQ9NTI7 297 aaPredicted RBP13.08□□□□□ -0.32
CPSF1-213ENST00000620219 M6PRP20645 277 aa13.08□□□□□ -0.32
CPSF1-213ENST00000620219 MSI2Q96DH6 328 aaKnown RBP13.08□□□□□ -0.32
CPSF1-213ENST00000620219 C19orf12Q9NSK7 152 aa13.08□□□□□ -0.32
CPSF1-213ENST00000620219 TLN2Q9Y4G6 2542 aa13.08□□□□□ -0.32
CPSF1-213ENST00000620219 RPS10-NUDT3A0A1W2PQS6 291 aa13.08□□□□□ -0.32
CPSF1-213ENST00000620219 TMEM178BH3BS89 294 aa13.08□□□□□ -0.32
CPSF1-213ENST00000620219 DLX1P56177 255 aa13.08□□□□□ -0.32
CPSF1-213ENST00000620219 CENPEQ02224 2701 aa13.08□□□□□ -0.32
CPSF1-213ENST00000620219 PINX1Q96BK5 328 aaKnown RBP13.08□□□□□ -0.32
CPSF1-213ENST00000620219 ZNRD1Q9P1U0 126 aa13.08□□□□□ -0.32
CPSF1-213ENST00000620219 STRAPQ9Y3F4 350 aaKnown RBP13.08□□□□□ -0.32
CPSF1-213ENST00000620219 KBTBD11-OT1A0A1B0GTJ5 212 aa13.07□□□□□ -0.32
CPSF1-213ENST00000620219 B3GALNT1O75752 331 aa13.07□□□□□ -0.32
CPSF1-213ENST00000620219 F12P00748 615 aaPredicted RBP13.07□□□□□ -0.32
CPSF1-213ENST00000620219 NCR3LG1Q68D85 454 aa13.07□□□□□ -0.32
CPSF1-213ENST00000620219 PCSK4Q6UW60 755 aa13.07□□□□□ -0.32
CPSF1-213ENST00000620219 Q6ZRG5 221 aa13.07□□□□□ -0.32
CPSF1-213ENST00000620219 TGIF2LXQ8IUE1 241 aa13.07□□□□□ -0.32
CPSF1-213ENST00000620219 CD300LFQ8TDQ1 290 aa13.07□□□□□ -0.32
CPSF1-213ENST00000620219 RHOVQ96L33 236 aa13.07□□□□□ -0.32
CPSF1-213ENST00000620219 TSNAXQ99598 290 aaKnown RBP13.07□□□□□ -0.32
CPSF1-213ENST00000620219 JPT1Q9UK76 154 aa13.07□□□□□ -0.32
CPSF1-213ENST00000620219 PPIAL4CA0A0B4J2A2 164 aa13.07□□□□□ -0.32
CPSF1-213ENST00000620219 DEDDO75618 318 aa13.07□□□□□ -0.32
CPSF1-213ENST00000620219 CNIH1O95406 144 aa13.07□□□□□ -0.32
CPSF1-213ENST00000620219 PPIAL4GP0DN37 164 aa13.07□□□□□ -0.32
CPSF1-213ENST00000620219 HKR1P10072 659 aa13.07□□□□□ -0.32
CPSF1-213ENST00000620219 OR4S2Q8NH73 311 aa13.07□□□□□ -0.32
CPSF1-213ENST00000620219 BSCL2Q96G97 398 aaPredicted RBP13.07□□□□□ -0.32
CPSF1-213ENST00000620219 HILPDAQ9Y5L2 63 aa13.07□□□□□ -0.32
CPSF1-213ENST00000620219 OR8U8P0C7N1 319 aa13.07□□□□□ -0.32
CPSF1-213ENST00000620219 BTN1A1Q13410 526 aa13.07□□□□□ -0.32
CPSF1-213ENST00000620219 ZNF345Q14585 488 aa13.07□□□□□ -0.32
CPSF1-213ENST00000620219 SUN5Q8TC36 379 aa13.07□□□□□ -0.32
CPSF1-213ENST00000620219 LINC00052Q96N35 136 aa13.07□□□□□ -0.32
CPSF1-213ENST00000620219 FAM96BQ9Y3D0 163 aa13.07□□□□□ -0.32
CPSF1-213ENST00000620219 SHISA9B4DS77 424 aa13.06□□□□□ -0.32
CPSF1-213ENST00000620219 ACAA1P09110 424 aaPredicted RBP13.06□□□□□ -0.32
CPSF1-213ENST00000620219 HLA-GP17693 338 aa13.06□□□□□ -0.32
CPSF1-213ENST00000620219 DYNLT3P51808 116 aa13.06□□□□□ -0.32
CPSF1-213ENST00000620219 ZNF273Q14593 569 aa13.06□□□□□ -0.32
CPSF1-213ENST00000620219 OR10P1Q8NGE3 313 aa13.06□□□□□ -0.32
CPSF1-213ENST00000620219 SHARPINQ9H0F6 387 aa13.06□□□□□ -0.32
CPSF1-213ENST00000620219 POMT1Q9Y6A1 747 aa13.06□□□□□ -0.32
CPSF1-213ENST00000620219 UBE2L5PA0A1B0GUS4 154 aa13.06□□□□□ -0.32
CPSF1-213ENST00000620219 F8W036 122 aa13.06□□□□□ -0.32
CPSF1-213ENST00000620219 BLOC1S1P78537 153 aa13.06□□□□□ -0.32
CPSF1-213ENST00000620219 HMGN3Q15651 99 aa13.06□□□□□ -0.32
CPSF1-213ENST00000620219 CBLN4Q9NTU7 201 aa13.06□□□□□ -0.32
CPSF1-213ENST00000620219 ZZEF1O43149 2961 aa13.06□□□□□ -0.32
CPSF1-213ENST00000620219 CEACAM18A8MTB9 384 aa13.06□□□□□ -0.32
CPSF1-213ENST00000620219 FAM157AC9JC47 383 aa13.06□□□□□ -0.32
CPSF1-213ENST00000620219 EWSR1Q01844 656 aaKnown RBP eCLIP13.06□□□□□ -0.324e-12■■■□□ 17.6
CPSF1-213ENST00000620219 MORN2Q502X0 79 aa13.06□□□□□ -0.32
CPSF1-213ENST00000620219 C4orf17Q53FE4 359 aa13.06□□□□□ -0.32
CPSF1-213ENST00000620219 HARBI1Q96MB7 349 aa13.06□□□□□ -0.32
CPSF1-213ENST00000620219 MS4A7Q9GZW8 240 aaPredicted RBP13.06□□□□□ -0.32
CPSF1-213ENST00000620219 DOPEY2Q9Y3R5 2298 aa13.06□□□□□ -0.32
CPSF1-213ENST00000620219 TAAR5O14804 337 aa13.05□□□□□ -0.32
CPSF1-213ENST00000620219 EIF3GO75821 320 aaKnown RBP eCLIP13.05□□□□□ -0.32
CPSF1-213ENST00000620219 UCP1P25874 307 aa13.05□□□□□ -0.32
CPSF1-213ENST00000620219 CDSNQ15517 529 aa13.05□□□□□ -0.32
CPSF1-213ENST00000620219 PDLIM3Q53GG5 364 aaPredicted RBP13.05□□□□□ -0.32
CPSF1-213ENST00000620219 ZBTB34Q8NCN2 500 aa13.05□□□□□ -0.32
CPSF1-213ENST00000620219 GAFA1Q96PS6 74 aa13.05□□□□□ -0.32
CPSF1-213ENST00000620219 ZNF729A6NN14 1252 aaPredicted RBP13.05□□□□□ -0.32
CPSF1-213ENST00000620219 HRASP01112 189 aa13.05□□□□□ -0.32
CPSF1-213ENST00000620219 DAZAP2Q15038 168 aaPredicted RBP13.05□□□□□ -0.32
CPSF1-213ENST00000620219 C1QTNF12Q5T7M4 302 aa13.05□□□□□ -0.32
CPSF1-213ENST00000620219 ABHD12Q8N2K0 398 aa13.05□□□□□ -0.32
CPSF1-213ENST00000620219 MARCH11A6NNE9 402 aa13.05□□□□□ -0.32
CPSF1-213ENST00000620219 NQO2P16083 231 aa13.05□□□□□ -0.32
CPSF1-213ENST00000620219 RPL30P62888 115 aaKnown RBP13.05□□□□□ -0.32
CPSF1-213ENST00000620219 Q8NFD4 153 aa13.05□□□□□ -0.32
CPSF1-213ENST00000620219 SFT2D1Q8WV19 159 aa13.05□□□□□ -0.32
CPSF1-213ENST00000620219 RUNX1Q01196 453 aa13.05□□□□□ -0.32
CPSF1-213ENST00000620219 PRORYQ9H606 182 aa13.05□□□□□ -0.32
CPSF1-213ENST00000620219 INSIG2Q9Y5U4 225 aa13.05□□□□□ -0.32
CPSF1-213ENST00000620219 FASNP49327 2511 aaKnown RBP13.05□□□□□ -0.32
CPSF1-213ENST00000620219 LINC00862A6NCI5 91 aa13.04□□□□□ -0.32
CPSF1-213ENST00000620219 HMGB3O15347 200 aaKnown RBP13.04□□□□□ -0.32
CPSF1-213ENST00000620219 SLC31A2O15432 143 aa13.04□□□□□ -0.32
CPSF1-213ENST00000620219 NDUFS7O75251 213 aa13.04□□□□□ -0.32
CPSF1-213ENST00000620219 ZNF737O75373 536 aa13.04□□□□□ -0.32
CPSF1-213ENST00000620219 PPT1P50897 306 aa13.04□□□□□ -0.32
CPSF1-213ENST00000620219 RPP30P78346 268 aaKnown RBP13.04□□□□□ -0.32
CPSF1-213ENST00000620219 DTD1Q8TEA8 209 aa13.04□□□□□ -0.32
CPSF1-213ENST00000620219 RAB40CQ96S21 281 aa13.04□□□□□ -0.32
CPSF1-213ENST00000620219 MAP1AP78559 2803 aaPredicted RBP13.04□□□□□ -0.32
CPSF1-213ENST00000620219 A0A1B0GU03 582 aa13.04□□□□□ -0.32
CPSF1-213ENST00000620219 TMEM8BA6NDV4 472 aa13.04□□□□□ -0.32
CPSF1-213ENST00000620219 FHITP49789 147 aa13.04□□□□□ -0.32
CPSF1-213ENST00000620219 PXDC1Q5TGL8 231 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms