RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 MAFAQ8NHW3 353 aaPredicted RBP10.69□□□□□ -0.7
LIG1-221ENST00000613670 TRAV24A0A0B4J272 114 aa10.69□□□□□ -0.7
LIG1-221ENST00000613670 TFF1P04155 84 aa10.69□□□□□ -0.7
LIG1-221ENST00000613670 FGF5P12034 268 aa10.69□□□□□ -0.7
LIG1-221ENST00000613670 CD33P20138 364 aa10.69□□□□□ -0.7
LIG1-221ENST00000613670 IER3P46695 156 aa10.69□□□□□ -0.7
LIG1-221ENST00000613670 TAAR6Q96RI8 345 aa10.69□□□□□ -0.7
LIG1-221ENST00000613670 CHD9Q3L8U1 2897 aa10.68□□□□□ -0.7
LIG1-221ENST00000613670 MUC22E2RYF6 1773 aaPredicted RBP10.68□□□□□ -0.7
LIG1-221ENST00000613670 LILRA1O75019 489 aa10.68□□□□□ -0.7
LIG1-221ENST00000613670 GCGP01275 180 aa10.68□□□□□ -0.7
LIG1-221ENST00000613670 PAX9P55771 341 aa10.68□□□□□ -0.7
LIG1-221ENST00000613670 JOSD1Q15040 202 aaPredicted RBP10.68□□□□□ -0.7
LIG1-221ENST00000613670 TMPRSS7Q7RTY8 843 aa10.68□□□□□ -0.7
LIG1-221ENST00000613670 R3HDM4Q96D70 268 aa10.68□□□□□ -0.7
LIG1-221ENST00000613670 KLRC4-KLRK1H3BQV0 150 aa10.68□□□□□ -0.7
LIG1-221ENST00000613670 ETV2O00321 342 aaPredicted RBP10.68□□□□□ -0.7
LIG1-221ENST00000613670 NAPSAO96009 420 aa10.68□□□□□ -0.7
LIG1-221ENST00000613670 TMEM42Q69YG0 159 aa10.68□□□□□ -0.7
LIG1-221ENST00000613670 Q8IYB0 196 aa10.68□□□□□ -0.7
LIG1-221ENST00000613670 PLPPR1Q8TBJ4 325 aa10.68□□□□□ -0.7
LIG1-221ENST00000613670 ZNF586Q9NXT0 402 aa10.68□□□□□ -0.7
LIG1-221ENST00000613670 ODAMA1E959 279 aa10.68□□□□□ -0.7
LIG1-221ENST00000613670 RAMP3O60896 148 aa10.68□□□□□ -0.7
LIG1-221ENST00000613670 UNQ6494/PRO21346Q6UXR6 183 aa10.68□□□□□ -0.7
LIG1-221ENST00000613670 SCCPDHQ8NBX0 429 aa10.68□□□□□ -0.7
LIG1-221ENST00000613670 OR2M7Q8NG81 312 aa10.68□□□□□ -0.7
LIG1-221ENST00000613670 SLC25A40Q8TBP6 338 aa10.68□□□□□ -0.7
LIG1-221ENST00000613670 LSM10Q969L4 123 aaKnown RBP10.68□□□□□ -0.7
LIG1-221ENST00000613670 IMMP2LQ96T52 175 aa10.68□□□□□ -0.7
LIG1-221ENST00000613670 S1PR3Q99500 378 aa10.68□□□□□ -0.7
LIG1-221ENST00000613670 DEPPQ9NTK1 212 aa10.68□□□□□ -0.7
LIG1-221ENST00000613670 CRIM1Q9NZV1 1036 aa10.68□□□□□ -0.7
LIG1-221ENST00000613670 TRBV24-1A0A075B6N3 115 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 IGKV1-5P01602 117 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 IGLV3-1P01715 115 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 HBZP02008 142 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 ATP5G3P48201 142 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 GCSAMLQ5JQS6 135 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 ACSM6Q6P461 480 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 HSPB9Q9BQS6 159 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 NAGKQ9UJ70 344 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 IFITM10A6NMD0 228 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 WNT9BO14905 357 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 KLF7O75840 302 aaPredicted RBP10.67□□□□□ -0.7
LIG1-221ENST00000613670 CD1BP29016 333 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 WNT5AP41221 380 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 NUBP1P53384 320 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 TIGITQ495A1 244 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 TCF23Q7RTU1 214 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 VKORC1L1Q8N0U8 176 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 OR5P3Q8WZ94 311 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 ACY3Q96HD9 319 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 PRDM13Q9H4Q3 707 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 AMTP48728 403 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 MIC13Q5XKP0 118 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 ZNF324BQ6AW86 544 aaPredicted RBP10.67□□□□□ -0.7
LIG1-221ENST00000613670 ZNF664Q8N3J9 261 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 LRFN3Q9BTN0 628 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 PRR14LQ5THK1 2151 aa10.67□□□□□ -0.7
LIG1-221ENST00000613670 TMEM250H0YL14 139 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 CBLN1P23435 193 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 UCP2P55851 309 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 PRR27Q6MZM9 219 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 GGNQ86UU5 652 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 BORCS7Q96B45 105 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 PINLYPA6NC86 204 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 C17orf98A8MV24 154 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 SNURFLB1AK76 121 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 AGFG2O95081 481 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 C1QTNF9P0C862 333 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 PLA2G5P39877 138 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 CRIP3Q6Q6R5 217 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 OR4P4Q8NGL7 312 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 MBD3L1Q8WWY6 194 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 TRIB1Q96RU8 372 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 GZMBP10144 247 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 OR10J1P30954 320 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 MEOX1P50221 254 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 SSPNQ14714 243 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 KIAA1644Q3SXP7 199 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 SAXO1Q8IYX7 474 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 CISD2Q8N5K1 135 aaKnown RBP10.66□□□□□ -0.7
LIG1-221ENST00000613670 NDUFAF3Q9BU61 184 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 SCRT1Q9BWW7 348 aa10.66□□□□□ -0.7
LIG1-221ENST00000613670 CEACAM1P13688 526 aa10.65□□□□□ -0.7
LIG1-221ENST00000613670 SSTR5P35346 364 aa10.65□□□□□ -0.7
LIG1-221ENST00000613670 LINC00205P59089 165 aa10.65□□□□□ -0.7
LIG1-221ENST00000613670 ZNF726P1Q15940 193 aa10.65□□□□□ -0.7
LIG1-221ENST00000613670 ASCL4Q6XD76 172 aa10.65□□□□□ -0.7
LIG1-221ENST00000613670 SSX7Q7RTT5 188 aa10.65□□□□□ -0.7
LIG1-221ENST00000613670 PPP1R32Q7Z5V6 425 aa10.65□□□□□ -0.7
LIG1-221ENST00000613670 ZNF439Q8NDP4 499 aa10.65□□□□□ -0.7
LIG1-221ENST00000613670 PKDREJQ9NTG1 2253 aa10.65□□□□□ -0.7
LIG1-221ENST00000613670 A0A1B0GUS0 222 aa10.65□□□□□ -0.7
LIG1-221ENST00000613670 LRRC30A6NM36 301 aa10.65□□□□□ -0.7
LIG1-221ENST00000613670 SUMO1P63165 101 aaKnown RBP10.65□□□□□ -0.7
LIG1-221ENST00000613670 OR5I1Q13606 314 aa10.65□□□□□ -0.7
LIG1-221ENST00000613670 MRPL54Q6P161 138 aaKnown RBP10.65□□□□□ -0.7
LIG1-221ENST00000613670 TMEM251Q8N6I4 163 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms