RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ZNF251Q9BRH9 671 aa12.4□□□□□ -0.42
TRIM28-209ENST00000597423 MGAT4CQ9UBM8 478 aa12.4□□□□□ -0.42
TRIM28-209ENST00000597423 TBL2Q9Y4P3 447 aaKnown RBP12.4□□□□□ -0.42
TRIM28-209ENST00000597423 YLPM1P49750 1951 aaKnown RBP12.39□□□□□ -0.43
TRIM28-209ENST00000597423 ODF3BA8MYP8 253 aa12.39□□□□□ -0.43
TRIM28-209ENST00000597423 RNASEK-C17orf49H0YIS7 233 aa12.39□□□□□ -0.43
TRIM28-209ENST00000597423 FCGR3BO75015 233 aa12.39□□□□□ -0.43
TRIM28-209ENST00000597423 PROP1O75360 226 aa12.39□□□□□ -0.43
TRIM28-209ENST00000597423 CCNKO75909 580 aa12.39□□□□□ -0.43
TRIM28-209ENST00000597423 HPRT1P00492 218 aa12.39□□□□□ -0.43
TRIM28-209ENST00000597423 HOXB4P17483 251 aaPredicted RBP12.39□□□□□ -0.43
TRIM28-209ENST00000597423 LPAR6P43657 344 aa12.39□□□□□ -0.43
TRIM28-209ENST00000597423 CYCSP99999 105 aaKnown RBP12.39□□□□□ -0.43
TRIM28-209ENST00000597423 GPR157Q5UAW9 335 aa12.39□□□□□ -0.43
TRIM28-209ENST00000597423 TMEM268Q5VZI3 342 aa12.39□□□□□ -0.43
TRIM28-209ENST00000597423 DHRS7BQ6IAN0 325 aaPredicted RBP12.39□□□□□ -0.43
TRIM28-209ENST00000597423 HCP5Q6MZN7 132 aa12.39□□□□□ -0.43
TRIM28-209ENST00000597423 GSG1LQ6UXU4 331 aa12.39□□□□□ -0.43
TRIM28-209ENST00000597423 DRAXINQ8NBI3 349 aaPredicted RBP12.39□□□□□ -0.43
TRIM28-209ENST00000597423 OR4P4Q8NGL7 312 aa12.39□□□□□ -0.43
TRIM28-209ENST00000597423 OR4S2Q8NH73 311 aa12.39□□□□□ -0.43
TRIM28-209ENST00000597423 RBPMSQ93062 196 aaKnown RBP12.39□□□□□ -0.43
TRIM28-209ENST00000597423 MALSU1Q96EH3 234 aa12.39□□□□□ -0.43
TRIM28-209ENST00000597423 RRNAD1Q96FB5 475 aaKnown RBP12.39□□□□□ -0.43
TRIM28-209ENST00000597423 GPHA2Q96T91 129 aa12.39□□□□□ -0.43
TRIM28-209ENST00000597423 TMED3Q9Y3Q3 217 aa12.39□□□□□ -0.43
TRIM28-209ENST00000597423 POLQO75417 2590 aa12.38□□□□□ -0.43
TRIM28-209ENST00000597423 C5orf51A6NDU8 294 aa12.38□□□□□ -0.43
TRIM28-209ENST00000597423 DBX1A6NMT0 343 aa12.38□□□□□ -0.43
TRIM28-209ENST00000597423 LY6LH3BQJ8 138 aa12.38□□□□□ -0.43
TRIM28-209ENST00000597423 GOSR2O14653 212 aa12.38□□□□□ -0.43
TRIM28-209ENST00000597423 CT45A6P0DMU7 189 aa12.38□□□□□ -0.43
TRIM28-209ENST00000597423 CT45A5P0DMU8 189 aa12.38□□□□□ -0.43
TRIM28-209ENST00000597423 CT45A7P0DMV0 189 aa12.38□□□□□ -0.43
TRIM28-209ENST00000597423 RAB13P51153 203 aa12.38□□□□□ -0.43
TRIM28-209ENST00000597423 DLX1P56177 255 aa12.38□□□□□ -0.43
TRIM28-209ENST00000597423 BPIFB3P59826 476 aa12.38□□□□□ -0.43
TRIM28-209ENST00000597423 RPL30P62888 115 aaKnown RBP12.38□□□□□ -0.43
TRIM28-209ENST00000597423 ZNF816Q0VGE8 651 aaPredicted RBP12.38□□□□□ -0.43
TRIM28-209ENST00000597423 TPTE2P1Q5T6R2 138 aa12.38□□□□□ -0.43
TRIM28-209ENST00000597423 SELENOHQ8IZQ5 122 aaKnown RBP12.38□□□□□ -0.43
TRIM28-209ENST00000597423 OR8H3Q8N146 312 aa12.38□□□□□ -0.43
TRIM28-209ENST00000597423 MAPK1IP1LQ8NDC0 245 aa12.38□□□□□ -0.43
TRIM28-209ENST00000597423 RNASE11Q8TAA1 199 aaKnown RBP12.38□□□□□ -0.43
TRIM28-209ENST00000597423 C5orf30Q96GV9 206 aa12.38□□□□□ -0.43
TRIM28-209ENST00000597423 C18orf12Q96KH6 178 aa12.38□□□□□ -0.43
TRIM28-209ENST00000597423 PLEKHA2Q9HB19 425 aa12.38□□□□□ -0.43
TRIM28-209ENST00000597423 ZNRD1Q9P1U0 126 aa12.38□□□□□ -0.43
TRIM28-209ENST00000597423 ITGB1BP2Q9UKP3 347 aa12.38□□□□□ -0.43
TRIM28-209ENST00000597423 UNC79Q9P2D8 2635 aa12.38□□□□□ -0.43
TRIM28-209ENST00000597423 IGHV1-69DA0A0B4J2H0 117 aa12.37□□□□□ -0.43
TRIM28-209ENST00000597423 C13orf42A0A1B0GVH6 325 aa12.37□□□□□ -0.43
TRIM28-209ENST00000597423 LINC00473A8K010 186 aa12.37□□□□□ -0.43
TRIM28-209ENST00000597423 FAM25EA8MYX2 175 aa12.37□□□□□ -0.43
TRIM28-209ENST00000597423 H7C2Y5 167 aa12.37□□□□□ -0.43
TRIM28-209ENST00000597423 NPFFO15130 113 aa12.37□□□□□ -0.43
TRIM28-209ENST00000597423 HRASP01112 189 aa12.37□□□□□ -0.43
TRIM28-209ENST00000597423 IGHV1-69P01742 117 aa12.37□□□□□ -0.43
TRIM28-209ENST00000597423 HOXB5P09067 269 aa12.37□□□□□ -0.43
TRIM28-209ENST00000597423 VDAC1P21796 283 aa12.37□□□□□ -0.43
TRIM28-209ENST00000597423 ERVK-16P61578 105 aa12.37□□□□□ -0.43
TRIM28-209ENST00000597423 KLRD1Q13241 179 aa12.37□□□□□ -0.43
TRIM28-209ENST00000597423 MOB3BQ86TA1 216 aa12.37□□□□□ -0.43
TRIM28-209ENST00000597423 ZNF383Q8NA42 475 aa12.37□□□□□ -0.43
TRIM28-209ENST00000597423 OR5AN1Q8NGI8 311 aa12.37□□□□□ -0.43
TRIM28-209ENST00000597423 SPIN2AQ99865 258 aa12.37□□□□□ -0.43
TRIM28-209ENST00000597423 SPIN2BQ9BPZ2 258 aa12.37□□□□□ -0.43
TRIM28-209ENST00000597423 PDCD10Q9BUL8 212 aa12.37□□□□□ -0.43
TRIM28-209ENST00000597423 MRPL20Q9BYC9 149 aaKnown RBP12.37□□□□□ -0.43
TRIM28-209ENST00000597423 ZNF436Q9C0F3 470 aaPredicted RBP12.37□□□□□ -0.43
TRIM28-209ENST00000597423 SLC35D1Q9NTN3 355 aa12.37□□□□□ -0.43
TRIM28-209ENST00000597423 COMMD9Q9P000 198 aa12.37□□□□□ -0.43
TRIM28-209ENST00000597423 CENPVL3A0A0U1RRI6 287 aa12.36□□□□□ -0.43
TRIM28-209ENST00000597423 REG1BP48304 166 aa12.36□□□□□ -0.43
TRIM28-209ENST00000597423 RAP2BP61225 183 aa12.36□□□□□ -0.43
TRIM28-209ENST00000597423 PRB3Q04118 309 aaPredicted RBP12.36□□□□□ -0.43
TRIM28-209ENST00000597423 ZNF585BQ52M93 769 aa12.36□□□□□ -0.43
TRIM28-209ENST00000597423 OR2B11Q5JQS5 317 aa12.36□□□□□ -0.43
TRIM28-209ENST00000597423 THOC7Q6I9Y2 204 aaKnown RBP12.36□□□□□ -0.43
TRIM28-209ENST00000597423 C1orf229Q6ZS94 237 aaPredicted RBP12.36□□□□□ -0.43
TRIM28-209ENST00000597423 LYZL2Q7Z4W2 148 aa12.36□□□□□ -0.43
TRIM28-209ENST00000597423 PDPNQ86YL7 162 aa12.36□□□□□ -0.43
TRIM28-209ENST00000597423 FAM219AQ8IW50 185 aa12.36□□□□□ -0.43
TRIM28-209ENST00000597423 PDZD9Q8IXQ8 264 aa12.36□□□□□ -0.43
TRIM28-209ENST00000597423 OR11H7Q8NGC8 314 aa12.36□□□□□ -0.43
TRIM28-209ENST00000597423 OR5M8Q8NGP6 311 aa12.36□□□□□ -0.43
TRIM28-209ENST00000597423 DDB2Q92466 427 aa12.36□□□□□ -0.43
TRIM28-209ENST00000597423 LSM10Q969L4 123 aaKnown RBP12.36□□□□□ -0.43
TRIM28-209ENST00000597423 PPP1R14BQ96C90 147 aa12.36□□□□□ -0.43
TRIM28-209ENST00000597423 FLYWCH2Q96CP2 140 aaKnown RBP12.36□□□□□ -0.43
TRIM28-209ENST00000597423 NABP2Q9BQ15 211 aa12.36□□□□□ -0.43
TRIM28-209ENST00000597423 PRR13Q9NZ81 148 aa12.36□□□□□ -0.43
TRIM28-209ENST00000597423 WASHC3Q9Y3C0 194 aa12.36□□□□□ -0.43
TRIM28-209ENST00000597423 IGHV1-3A0A0C4DH29 117 aa12.35□□□□□ -0.43
TRIM28-209ENST00000597423 A0A1W2PRD5 423 aa12.35□□□□□ -0.43
TRIM28-209ENST00000597423 A0A1W2PRF3 423 aa12.35□□□□□ -0.43
TRIM28-209ENST00000597423 A0A1W2PRM7 423 aa12.35□□□□□ -0.43
TRIM28-209ENST00000597423 SMAD7O15105 426 aaKnown RBP12.35□□□□□ -0.43
TRIM28-209ENST00000597423 GIPP09681 153 aaPredicted RBP12.35□□□□□ -0.43
TRIM28-209ENST00000597423 NQO2P16083 231 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms