RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 B4DSR2 109 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 MFNGO00587 321 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 VSIG10L2P0DP72 767 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 ZNF250P15622 560 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 HOXD11P31277 338 aaPredicted RBP7.73□□□□□ -1.17
VPS39-205ENST00000562258 MC5RP33032 325 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 LIAT1Q6ZQX7 453 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 DMRTC2Q8IXT2 367 aaPredicted RBP7.73□□□□□ -1.17
VPS39-205ENST00000562258 OR1L8Q8NGR8 309 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 OR2T6Q8NHC8 308 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 P2RX4Q99571 388 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 FAM103A1Q9BTL3 118 aaKnown RBP7.73□□□□□ -1.17
VPS39-205ENST00000562258 PLSCR2Q9NRY7 297 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 ZNF581Q9P0T4 197 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 WASHC3Q9Y3C0 194 aa7.73□□□□□ -1.17
VPS39-205ENST00000562258 FAM90A10PA6NDY2 464 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 FAM90A18PA6NE21 464 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 FAM90A16PA6NEW6 464 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 FAM90A20PA6NIJ5 464 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 FAM90A8PA6NJQ4 464 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 FAM90A7PA6NKC0 464 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 FAM90A22PA8MWA6 464 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 FAM90A12PA8MX19 464 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 FAM90A5PA8MXJ8 464 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 FAM90A23PA8MXZ1 464 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 SCAF4O95104 1147 aaKnown RBP7.72□□□□□ -1.17
VPS39-205ENST00000562258 DUS4LO95620 317 aaKnown RBP7.72□□□□□ -1.17
VPS39-205ENST00000562258 FAM90A15PP0C7V4 464 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 FAM90A13PP0C7W8 464 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 FAM90A14PP0C7W9 464 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 FAM90A24PP0C7X0 464 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 CD200P41217 278 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 FAM122CQ6P4D5 195 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 DRAM1Q8N682 238 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 TPPP3Q9BW30 176 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 FKBP11Q9NYL4 201 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 TRIM77I1YAP6 450 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 SYNGR2O43760 224 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 F12P00748 615 aaPredicted RBP7.72□□□□□ -1.17
VPS39-205ENST00000562258 S100A11P31949 105 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 TFPI2P48307 235 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 RAB4BP61018 213 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 Q6ZR03 302 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 TMEM219Q86XT9 240 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 ARPC5LQ9BPX5 153 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 FAM212BQ9NTI7 297 aaPredicted RBP7.72□□□□□ -1.17
VPS39-205ENST00000562258 DYSFO75923 2080 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 IGHV3OR16-13A0A075B7E8 117 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 IGHV3-74A0A0B4J1X5 117 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 A0A0D9SG52 128 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 SNRPGP15A8MWD9 76 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 J3QRE1 110 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 TXNL1O43396 289 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 FGF7P21781 194 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 OTX1P32242 354 aaPredicted RBP7.72□□□□□ -1.17
VPS39-205ENST00000562258 LYZP61626 148 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 NUP37Q8NFH4 326 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 OR5C1Q8NGR4 320 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 DTD1Q8TEA8 209 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 SSMEM1Q8WWF3 244 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 LIME1Q9H400 295 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 VSIG4Q9Y279 399 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 ARHGAP32A7KAX9 2087 aa7.72□□□□□ -1.17
VPS39-205ENST00000562258 SIGLEC5O15389 551 aa7.71□□□□□ -1.17
VPS39-205ENST00000562258 COX7A2P2O60397 106 aa7.71□□□□□ -1.17
VPS39-205ENST00000562258 SNRNP70P08621 437 aaKnown RBP7.71□□□□□ -1.17
VPS39-205ENST00000562258 SLC25A6P12236 298 aa7.71□□□□□ -1.17
VPS39-205ENST00000562258 SLC6A1P30531 599 aa7.71□□□□□ -1.17
VPS39-205ENST00000562258 IL17RELQ6ZVW7 336 aa7.71□□□□□ -1.17
VPS39-205ENST00000562258 GINS3Q9BRX5 216 aa7.71□□□□□ -1.17
VPS39-205ENST00000562258 JPT1Q9UK76 154 aa7.71□□□□□ -1.17
VPS39-205ENST00000562258 IGHV3OR16-8A0A075B7F1 116 aa7.71□□□□□ -1.18
VPS39-205ENST00000562258 DNASE2O00115 360 aaPredicted RBP7.71□□□□□ -1.18
VPS39-205ENST00000562258 ZNF273Q14593 569 aa7.71□□□□□ -1.18
VPS39-205ENST00000562258 FGFRL1Q8N441 504 aa7.71□□□□□ -1.18
VPS39-205ENST00000562258 KDF1Q8NAX2 398 aaPredicted RBP7.71□□□□□ -1.18
VPS39-205ENST00000562258 DMRTA2Q96SC8 542 aa7.71□□□□□ -1.18
VPS39-205ENST00000562258 NUPL2O15504 423 aaKnown RBP7.71□□□□□ -1.18
VPS39-205ENST00000562258 NPBWR1P48145 328 aa7.71□□□□□ -1.18
VPS39-205ENST00000562258 RPL8P62917 257 aaKnown RBP7.71□□□□□ -1.18
VPS39-205ENST00000562258 RSPO1Q2MKA7 263 aaPredicted RBP7.71□□□□□ -1.18
VPS39-205ENST00000562258 FAM166AQ6J272 317 aa7.71□□□□□ -1.18
VPS39-205ENST00000562258 PCSK4Q6UW60 755 aa7.71□□□□□ -1.18
VPS39-205ENST00000562258 CD177Q8N6Q3 437 aa7.71□□□□□ -1.18
VPS39-205ENST00000562258 LINC00312Q9Y6C7 94 aa7.71□□□□□ -1.18
VPS39-205ENST00000562258 MAST4O15021 2626 aa7.71□□□□□ -1.18
VPS39-205ENST00000562258 RPS10-NUDT3A0A1W2PQS6 291 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 PGLYRP1O75594 196 aaPredicted RBP7.7□□□□□ -1.18
VPS39-205ENST00000562258 S1PR2O95136 353 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 GIPP09681 153 aaPredicted RBP7.7□□□□□ -1.18
VPS39-205ENST00000562258 IGFBP3P17936 291 aaPredicted RBP7.7□□□□□ -1.18
VPS39-205ENST00000562258 KIR2DS2P43631 304 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 PPOXP50336 477 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 KLF9Q13886 244 aaPredicted RBP7.7□□□□□ -1.18
VPS39-205ENST00000562258 ZNF818PQ6ZRF7 136 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 TEX29Q8N6K0 151 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 MITD1Q8WV92 249 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 TMEM186Q96B77 213 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 UQCC1Q9NVA1 299 aa7.7□□□□□ -1.18
VPS39-205ENST00000562258 C19orf84I3L1E1 186 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms