RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-222	ENST00000555774	OR10G9	Q8NGN4	311 aa		11.27	□□□□□ -0.6
SHMT2-222	ENST00000555774	OR10G7	Q8NGN6	311 aa		11.27	□□□□□ -0.6
SHMT2-222	ENST00000555774	SMIM7	Q9BQ49	75 aa		11.27	□□□□□ -0.6
SHMT2-222	ENST00000555774	ESPL1	Q14674	2120 aa		11.27	□□□□□ -0.6
SHMT2-222	ENST00000555774	PPP1R2P9	O14990	202 aa		11.27	□□□□□ -0.61
SHMT2-222	ENST00000555774	ZG16	O60844	167 aa		11.27	□□□□□ -0.61
SHMT2-222	ENST00000555774	PTBP3	O95758	552 aa	Known RBP	11.27	□□□□□ -0.61
SHMT2-222	ENST00000555774	CECR9	P0C854	216 aa		11.27	□□□□□ -0.61
SHMT2-222	ENST00000555774	DNLZ	Q5SXM8	178 aa		11.27	□□□□□ -0.61
SHMT2-222	ENST00000555774		Q6ZR03	302 aa		11.27	□□□□□ -0.61
SHMT2-222	ENST00000555774	OR13A1	Q8NGR1	328 aa		11.27	□□□□□ -0.61
SHMT2-222	ENST00000555774	NPCDR1	Q9BY65	106 aa		11.27	□□□□□ -0.61
SHMT2-222	ENST00000555774	MED12L	Q86YW9	2145 aa		11.27	□□□□□ -0.61
SHMT2-222	ENST00000555774	OR5H1	A6NKK0	313 aa		11.26	□□□□□ -0.61
SHMT2-222	ENST00000555774	IFITM10	A6NMD0	228 aa		11.26	□□□□□ -0.61
SHMT2-222	ENST00000555774	C15orf65	H3BRN8	121 aa		11.26	□□□□□ -0.61
SHMT2-222	ENST00000555774	ATXN7	O15265	892 aa	Predicted RBP	11.26	□□□□□ -0.61
SHMT2-222	ENST00000555774	WISP2	O76076	250 aa		11.26	□□□□□ -0.61
SHMT2-222	ENST00000555774	AGFG2	O95081	481 aa		11.26	□□□□□ -0.61
SHMT2-222	ENST00000555774	FFAR4	Q5NUL3	377 aa		11.26	□□□□□ -0.61
SHMT2-222	ENST00000555774	BEND4	Q6ZU67	534 aa		11.26	□□□□□ -0.61
SHMT2-222	ENST00000555774	C9orf106	Q8NAJ2	232 aa		11.26	□□□□□ -0.61
SHMT2-222	ENST00000555774	DIRC2	Q96SL1	478 aa		11.26	□□□□□ -0.61
SHMT2-222	ENST00000555774	PLSCR4	Q9NRQ2	329 aa		11.26	□□□□□ -0.61
SHMT2-222	ENST00000555774	DMRT1	Q9Y5R6	373 aa		11.26	□□□□□ -0.61
SHMT2-222	ENST00000555774	TRAV17	A0A0B4J275	112 aa		11.26	□□□□□ -0.61
SHMT2-222	ENST00000555774	IGHV2-70	P01814	119 aa		11.26	□□□□□ -0.61
SHMT2-222	ENST00000555774	RPP30	P78346	268 aa	Known RBP	11.26	□□□□□ -0.61
SHMT2-222	ENST00000555774	TMEM249	Q2WGJ8	235 aa		11.26	□□□□□ -0.61
SHMT2-222	ENST00000555774	FAM180A	Q6UWF9	173 aa		11.26	□□□□□ -0.61
SHMT2-222	ENST00000555774	BTNL3	Q6UXE8	466 aa		11.26	□□□□□ -0.61
SHMT2-222	ENST00000555774	PYGO2	Q9BRQ0	406 aa		11.26	□□□□□ -0.61
SHMT2-222	ENST00000555774	SLC25A22	Q9H936	323 aa		11.26	□□□□□ -0.61
SHMT2-222	ENST00000555774	JPT1	Q9UK76	154 aa		11.26	□□□□□ -0.61
SHMT2-222	ENST00000555774	DNAJC13	O75165	2243 aa		11.26	□□□□□ -0.61
SHMT2-222	ENST00000555774	AHCTF1	Q8WYP5	2266 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	SMCO3	A2RU48	225 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	MARCH11	A6NNE9	402 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	CD55	P08174	381 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	SSTR5	P35346	364 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	ACOT6	Q3I5F7	207 aa	Predicted RBP	11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774		Q3ZCU0	254 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	VWA1	Q6PCB0	445 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	SPNS3	Q6ZMD2	512 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	PPP1R35	Q8TAP8	253 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	PSG11	Q9UQ72	335 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	IGHV2OR16-5	A0A0B4J2B6	119 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	LINC00473	A8K010	186 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	PHOX2A	O14813	284 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	RBMXL2	O75526	392 aa	Known RBP	11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	TRGC1	P0CF51	173 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	GZMH	P20718	246 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	TRIP6	Q15654	476 aa	Known RBP	11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	ADIRF	Q15847	76 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	BSX	Q3C1V8	233 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	TGIF2LY	Q8IUE0	185 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	HIST3H2BB	Q8N257	126 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	LRRC29	Q8WV35	223 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	ZDHHC16	Q969W1	377 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	R3HDM4	Q96D70	268 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	SRD5A3	Q9H8P0	318 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	UFSP2	Q9NUQ7	469 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	METRN	Q9UJH8	293 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	MED13	Q9UHV7	2174 aa		11.25	□□□□□ -0.61
SHMT2-222	ENST00000555774	ST8SIA5	O15466	376 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	RBFOX2	O43251	390 aa	Known RBP eCLIP	11.24	□□□□□ -0.61	5e-15	■■■■■ 33.3
SHMT2-222	ENST00000555774	HPRT1	P00492	218 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	PRDX2	P32119	198 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	GPR12	P47775	334 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	CCL11	P51671	97 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	TFF3	Q07654	80 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	P2RY6	Q15077	328 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	CR1L	Q2VPA4	569 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	FAM53A	Q6NSI3	398 aa	Predicted RBP	11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	CD177	Q8N6Q3	437 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	FDCSP	Q8NFU4	85 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	OR10A7	Q8NGE5	316 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	OR52E5	Q8NH55	327 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	FRZB	Q92765	325 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	IGHV1-18	A0A0C4DH31	117 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	AHRR	A9YTQ3	701 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	MPDU1	O75352	247 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	VENTX	O95231	258 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	DUT	P33316	252 aa	Known RBP	11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	CFHR2	P36980	270 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	FABP6	P51161	128 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	RPL23	P62829	140 aa	Known RBP	11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	FOXF2	Q12947	444 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	PDLIM3	Q53GG5	364 aa	Predicted RBP	11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	ABHD5	Q8WTS1	349 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	RAB1C	Q92928	201 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	RAB24	Q969Q5	203 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	ANAPC16	Q96DE5	110 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	PARL	Q9H300	379 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	MSL2	Q9HCI7	577 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	PROCR	Q9UNN8	238 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	WDR83OS	Q9Y284	106 aa		11.24	□□□□□ -0.61
SHMT2-222	ENST00000555774	ZDBF2	Q9HCK1	2354 aa		11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	C15orf62	A8K5M9	175 aa		11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	SRRM5	B3KS81	715 aa		11.23	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms