RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	RPL30	P62888	115 aa	Known RBP	10.9	□□□□□ -0.66
CPSF7-223	ENST00000544669	BHLHA15	Q7RTS1	189 aa	Predicted RBP	10.9	□□□□□ -0.66
CPSF7-223	ENST00000544669	ZNF808	Q8N4W9	903 aa	Predicted RBP	10.9	□□□□□ -0.66
CPSF7-223	ENST00000544669	OR10A7	Q8NGE5	316 aa		10.9	□□□□□ -0.66
CPSF7-223	ENST00000544669	OR4A16	Q8NH70	328 aa		10.9	□□□□□ -0.66
CPSF7-223	ENST00000544669	R3HDM4	Q96D70	268 aa		10.9	□□□□□ -0.66
CPSF7-223	ENST00000544669	VSIR	Q9H7M9	311 aa		10.9	□□□□□ -0.66
CPSF7-223	ENST00000544669	SRD5A3	Q9H8P0	318 aa		10.9	□□□□□ -0.66
CPSF7-223	ENST00000544669	DMRT1	Q9Y5R6	373 aa		10.9	□□□□□ -0.66
CPSF7-223	ENST00000544669	C17orf98	A8MV24	154 aa		10.89	□□□□□ -0.67
CPSF7-223	ENST00000544669	SRRM5	B3KS81	715 aa		10.89	□□□□□ -0.67
CPSF7-223	ENST00000544669		F6UZH7	168 aa		10.89	□□□□□ -0.67
CPSF7-223	ENST00000544669	CXCL1	P09341	107 aa		10.89	□□□□□ -0.67
CPSF7-223	ENST00000544669	MDK	P21741	143 aa	Predicted RBP	10.89	□□□□□ -0.67
CPSF7-223	ENST00000544669	FABP6	P51161	128 aa		10.89	□□□□□ -0.67
CPSF7-223	ENST00000544669	ATP5I	P56385	69 aa	Predicted RBP	10.89	□□□□□ -0.67
CPSF7-223	ENST00000544669	TMPRSS3	P57727	454 aa		10.89	□□□□□ -0.67
CPSF7-223	ENST00000544669	KCNIP4	Q6PIL6	250 aa		10.89	□□□□□ -0.67
CPSF7-223	ENST00000544669	SLC16A13	Q7RTY0	426 aa		10.89	□□□□□ -0.67
CPSF7-223	ENST00000544669	LRRC29	Q8WV35	223 aa		10.89	□□□□□ -0.67
CPSF7-223	ENST00000544669	CORO2A	Q92828	525 aa		10.89	□□□□□ -0.67
CPSF7-223	ENST00000544669	S100PBP	Q96BU1	408 aa		10.89	□□□□□ -0.67
CPSF7-223	ENST00000544669	NEIL1	Q96FI4	390 aa	Predicted RBP	10.89	□□□□□ -0.67
CPSF7-223	ENST00000544669	ADTRP	Q96IZ2	230 aa		10.89	□□□□□ -0.67
CPSF7-223	ENST00000544669	PYGO2	Q9BRQ0	406 aa		10.89	□□□□□ -0.67
CPSF7-223	ENST00000544669	TMEM204	Q9BSN7	226 aa		10.89	□□□□□ -0.67
CPSF7-223	ENST00000544669	ZNF71	Q9NQZ8	489 aa	Predicted RBP	10.89	□□□□□ -0.67
CPSF7-223	ENST00000544669	GNG12	Q9UBI6	72 aa		10.89	□□□□□ -0.67
CPSF7-223	ENST00000544669	CLN8	Q9UBY8	286 aa		10.89	□□□□□ -0.67
CPSF7-223	ENST00000544669	URGCP-MRPS24	S4R325	110 aa		10.89	□□□□□ -0.67
CPSF7-223	ENST00000544669	TGIF2-C20orf24	A0A0A6YYL0	155 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	IGHV2OR16-5	A0A0B4J2B6	119 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669		A0A1W2PPV4	95 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	C15orf65	H3BRN8	121 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669		H7BYZ3	331 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	HIST1H2BK	O60814	126 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	HIST1H2BJ	P06899	126 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	HIST1H2BO	P23527	126 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	CD1B	P29016	333 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	HIST1H2BB	P33778	126 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	SRP14	P37108	136 aa	Known RBP	10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	FGF8	P55075	233 aa	Predicted RBP	10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	HIST1H2BD	P58876	126 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	SELENOV	P59797	346 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	HIST1H2BC	P62807	126 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	RAB31	Q13636	194 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	HIST2H2BE	Q16778	126 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	TMPRSS7	Q7RTY8	843 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	PIP4P1	Q86T03	277 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	VASH2	Q86V25	355 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	FDCSP	Q8NFU4	85 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	HIST1H2BH	Q93079	126 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	S1PR3	Q99500	378 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	HIST1H2BN	Q99877	126 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	HIST1H2BM	Q99879	126 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	MIOX	Q9UGB7	285 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	PSG11	Q9UQ72	335 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	WDR83OS	Q9Y284	106 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	F2RL2	O00254	374 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	ZG16	O60844	167 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	DUT	P33316	252 aa	Known RBP	10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	CDC34	P49427	236 aa	Predicted RBP	10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	FAM3B	P58499	235 aa	Predicted RBP	10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669		Q3ZCU0	254 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	TIMM23B	Q5SRD1	257 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	ZNF826P	Q6ZT77	177 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	ZADH2	Q8N4Q0	377 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	GCSAM	Q8N6F7	178 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	C9orf106	Q8NAJ2	232 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	OR13A1	Q8NGR1	328 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	RAB24	Q969Q5	203 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	IMMP2L	Q96T52	175 aa		10.88	□□□□□ -0.67
CPSF7-223	ENST00000544669	MBD3L4	A6NDZ8	208 aa	Predicted RBP	10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	MBD3L3	A6NE82	208 aa	Predicted RBP	10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	MBD3L5	A6NJ08	208 aa	Predicted RBP	10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	PPP5D1	E7EU14	171 aa		10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	WNT9B	O14905	357 aa		10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	WISP2	O76076	250 aa		10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	MT-CO2	P00403	227 aa		10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	IGHV3-13	P01766	116 aa		10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	TRGC2	P03986	189 aa		10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	OPRK1	P41145	380 aa		10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	CEBPD	P49716	269 aa	Predicted RBP	10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	ADIRF	Q15847	76 aa		10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	SSX2	Q16385	188 aa		10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	MORN2	Q502X0	79 aa		10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	NCMAP	Q5T1S8	102 aa		10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	PRAMEF5	Q5TYX0	476 aa		10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	PRAMEF6	Q5VXH4	476 aa		10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	ZNF343	Q6P1L6	599 aa		10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	ACSM6	Q6P461	480 aa		10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	CXorf67	Q86X51	503 aa	Predicted RBP	10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	UBALD1	Q8TB05	177 aa		10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	ACY3	Q96HD9	319 aa		10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	PFDN5	Q99471	154 aa		10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	ARHGAP21	Q5T5U3	1957 aa		10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	ARID1A	O14497	2285 aa		10.87	□□□□□ -0.67
CPSF7-223	ENST00000544669	TRGV8	A0A0C4DH27	118 aa		10.86	□□□□□ -0.67

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