RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 RBKSQ9H477 322 aa12.01□□□□□ -0.49
USP3-204ENST00000540797 CACNA1GO43497 2377 aa12.01□□□□□ -0.49
USP3-204ENST00000540797 CTXND1A0A1B0GTU2 59 aa12.01□□□□□ -0.49
USP3-204ENST00000540797 PITX3O75364 302 aa12.01□□□□□ -0.49
USP3-204ENST00000540797 RTN4RQ9BZR6 473 aa12.01□□□□□ -0.49
USP3-204ENST00000540797 NAT8Q9UHE5 227 aa12.01□□□□□ -0.49
USP3-204ENST00000540797 VAX2Q9UIW0 290 aa12.01□□□□□ -0.49
USP3-204ENST00000540797 FAM216BQ8N7L0 139 aa12.01□□□□□ -0.49
USP3-204ENST00000540797 PRSS3P2Q8NHM4 247 aa12.01□□□□□ -0.49
USP3-204ENST00000540797 C11orf42Q8N5U0 333 aa12□□□□□ -0.49
USP3-204ENST00000540797 SOSTQ9BQB4 213 aa12□□□□□ -0.49
USP3-204ENST00000540797 ELF5Q9UKW6 265 aaPredicted RBP12□□□□□ -0.49
USP3-204ENST00000540797 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12□□□□□ -0.49
USP3-204ENST00000540797 FCN1O00602 326 aa12□□□□□ -0.49
USP3-204ENST00000540797 ATP6V0CP27449 155 aa12□□□□□ -0.49
USP3-204ENST00000540797 MFAP4P55083 255 aa12□□□□□ -0.49
USP3-204ENST00000540797 HSPE1P61604 102 aaKnown RBP12□□□□□ -0.49
USP3-204ENST00000540797 NHLH2Q02577 135 aa12□□□□□ -0.49
USP3-204ENST00000540797 UNC119Q13432 240 aa12□□□□□ -0.49
USP3-204ENST00000540797 EBLN2Q6P2I7 272 aa12□□□□□ -0.49
USP3-204ENST00000540797 TMEM37Q8WXS4 190 aa12□□□□□ -0.49
USP3-204ENST00000540797 REPIN1Q9BWE0 567 aaKnown RBP12□□□□□ -0.49
USP3-204ENST00000540797 MMP9P14780 707 aa12□□□□□ -0.49
USP3-204ENST00000540797 RANP62826 216 aaKnown RBP12□□□□□ -0.49
USP3-204ENST00000540797 DEFA6Q01524 100 aa12□□□□□ -0.49
USP3-204ENST00000540797 BSXQ3C1V8 233 aa12□□□□□ -0.49
USP3-204ENST00000540797 FAM106AQ4KMX7 169 aa12□□□□□ -0.49
USP3-204ENST00000540797 C1QTNF12Q5T7M4 302 aa12□□□□□ -0.49
USP3-204ENST00000540797 POC1AQ8NBT0 407 aa12□□□□□ -0.49
USP3-204ENST00000540797 GPR146Q96CH1 333 aa12□□□□□ -0.49
USP3-204ENST00000540797 MARCH11A6NNE9 402 aa12□□□□□ -0.49
USP3-204ENST00000540797 RGS13O14921 159 aa12□□□□□ -0.49
USP3-204ENST00000540797 KRTDAPP60985 99 aa12□□□□□ -0.49
USP3-204ENST00000540797 SELENOTP62341 195 aa12□□□□□ -0.49
USP3-204ENST00000540797 DGAT2L7PQ6IED9 249 aa12□□□□□ -0.49
USP3-204ENST00000540797 RNASEKQ6P5S7 137 aaKnown RBP12□□□□□ -0.49
USP3-204ENST00000540797 NRIP2Q9BQI9 281 aa12□□□□□ -0.49
USP3-204ENST00000540797 QTRT1Q9BXR0 403 aaKnown RBP12□□□□□ -0.49
USP3-204ENST00000540797 OR2T8A6NH00 312 aa12□□□□□ -0.49
USP3-204ENST00000540797 TGFAP01135 160 aa12□□□□□ -0.49
USP3-204ENST00000540797 ATP5G2Q06055 141 aa12□□□□□ -0.49
USP3-204ENST00000540797 FAM216AQ8WUB2 273 aa12□□□□□ -0.49
USP3-204ENST00000540797 NYNRINQ9P2P1 1898 aaKnown RBP12□□□□□ -0.49
USP3-204ENST00000540797 PXMP4Q9Y6I8 212 aa12□□□□□ -0.49
USP3-204ENST00000540797 HELTA6NFD8 242 aa11.99□□□□□ -0.49
USP3-204ENST00000540797 IQCF6A8MYZ5 107 aa11.99□□□□□ -0.49
USP3-204ENST00000540797 H0YL77 283 aa11.99□□□□□ -0.49
USP3-204ENST00000540797 BMPR1BO00238 502 aa11.99□□□□□ -0.49
USP3-204ENST00000540797 PMCHP20382 165 aa11.99□□□□□ -0.49
USP3-204ENST00000540797 ZP3P21754 424 aa11.99□□□□□ -0.49
USP3-204ENST00000540797 COMPP49747 757 aaPredicted RBP11.99□□□□□ -0.49
USP3-204ENST00000540797 RND2P52198 227 aa11.99□□□□□ -0.49
USP3-204ENST00000540797 ASPHD2Q6ICH7 369 aa11.99□□□□□ -0.49
USP3-204ENST00000540797 KIAA1324LA8MWY0 1029 aaPredicted RBP11.99□□□□□ -0.49
USP3-204ENST00000540797 SRSF10O75494 262 aaKnown RBP11.99□□□□□ -0.49
USP3-204ENST00000540797 AMTP48728 403 aa11.99□□□□□ -0.49
USP3-204ENST00000540797 C16orf92Q96LL3 132 aa11.99□□□□□ -0.49
USP3-204ENST00000540797 TOLLIPQ9H0E2 274 aa11.99□□□□□ -0.49
USP3-204ENST00000540797 CBLN4Q9NTU7 201 aa11.99□□□□□ -0.49
USP3-204ENST00000540797 RLFQ13129 1914 aa11.99□□□□□ -0.49
USP3-204ENST00000540797 SCO1O75880 301 aa11.99□□□□□ -0.49
USP3-204ENST00000540797 S1PR2O95136 353 aa11.99□□□□□ -0.49
USP3-204ENST00000540797 LINC00869P0C866 280 aa11.99□□□□□ -0.49
USP3-204ENST00000540797 FXYD3Q14802 87 aa11.99□□□□□ -0.49
USP3-204ENST00000540797 SELENOHQ8IZQ5 122 aaKnown RBP11.99□□□□□ -0.49
USP3-204ENST00000540797 OR10G8Q8NGN5 311 aa11.99□□□□□ -0.49
USP3-204ENST00000540797 MRPL13Q9BYD1 178 aaKnown RBP11.99□□□□□ -0.49
USP3-204ENST00000540797 PDE6DO43924 150 aa11.98□□□□□ -0.49
USP3-204ENST00000540797 RD3LP0DJH9 198 aa11.98□□□□□ -0.49
USP3-204ENST00000540797 ZNF137PP52743 207 aa11.98□□□□□ -0.49
USP3-204ENST00000540797 LRRC75BQ2VPJ9 315 aa11.98□□□□□ -0.49
USP3-204ENST00000540797 C1QL2Q7Z5L3 287 aa11.98□□□□□ -0.49
USP3-204ENST00000540797 TMEM252Q8N6L7 170 aa11.98□□□□□ -0.49
USP3-204ENST00000540797 LSM10Q969L4 123 aaKnown RBP11.98□□□□□ -0.49
USP3-204ENST00000540797 C7orf69Q9H7B7 122 aa11.98□□□□□ -0.49
USP3-204ENST00000540797 DPM3Q9P2X0 92 aa11.98□□□□□ -0.49
USP3-204ENST00000540797 SDK2Q58EX2 2172 aa11.98□□□□□ -0.49
USP3-204ENST00000540797 SEC11BP0C7V7 166 aa11.98□□□□□ -0.49
USP3-204ENST00000540797 P2RY4P51582 365 aa11.98□□□□□ -0.49
USP3-204ENST00000540797 TCL1AP56279 114 aa11.98□□□□□ -0.49
USP3-204ENST00000540797 CXorf66Q5JRM2 361 aaPredicted RBP11.98□□□□□ -0.49
USP3-204ENST00000540797 FABP4P15090 132 aa11.98□□□□□ -0.49
USP3-204ENST00000540797 DRAM1Q8N682 238 aa11.98□□□□□ -0.49
USP3-204ENST00000540797 TMPRSS5Q9H3S3 457 aa11.98□□□□□ -0.49
USP3-204ENST00000540797 NPIPB11E5RHQ5 1161 aa11.98□□□□□ -0.49
USP3-204ENST00000540797 TM4SF5O14894 197 aa11.98□□□□□ -0.49
USP3-204ENST00000540797 TM4SF20Q53R12 229 aa11.98□□□□□ -0.49
USP3-204ENST00000540797 LAMTOR1Q6IAA8 161 aa11.98□□□□□ -0.49
USP3-204ENST00000540797 ZNF818PQ6ZRF7 136 aa11.98□□□□□ -0.49
USP3-204ENST00000540797 STPG3Q8N7X2 389 aa11.98□□□□□ -0.49
USP3-204ENST00000540797 YAE1D1Q9NRH1 226 aa11.98□□□□□ -0.49
USP3-204ENST00000540797 MPDU1O75352 247 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 KBTBD11O94819 623 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 SNRPCP09234 159 aaKnown RBP11.97□□□□□ -0.49
USP3-204ENST00000540797 PNRC1Q12796 327 aaPredicted RBP11.97□□□□□ -0.49
USP3-204ENST00000540797 WDR73Q6P4I2 378 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 FAM131CQ96AQ9 280 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 ZNF430Q9H8G1 570 aaPredicted RBP11.97□□□□□ -0.49
USP3-204ENST00000540797 TNFSF18Q9UNG2 199 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 ZG16O60844 167 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms