RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 LINC00311Q8N616 119 aa12.48□□□□□ -0.41
CUX2-202ENST00000397643 ZNF491Q8N8L2 437 aa12.48□□□□□ -0.41
CUX2-202ENST00000397643 OR1N2Q8NGR9 330 aa12.48□□□□□ -0.41
CUX2-202ENST00000397643 C15orf40Q8WUR7 153 aa12.48□□□□□ -0.41
CUX2-202ENST00000397643 RTN4IP1Q8WWV3 396 aaPredicted RBP12.48□□□□□ -0.41
CUX2-202ENST00000397643 UBE2E2Q96LR5 201 aa12.48□□□□□ -0.41
CUX2-202ENST00000397643 ZMAT4Q9H898 229 aa12.48□□□□□ -0.41
CUX2-202ENST00000397643 C12orf4Q9NQ89 552 aa12.48□□□□□ -0.41
CUX2-202ENST00000397643 PTTG2Q9NZH5 202 aa12.48□□□□□ -0.41
CUX2-202ENST00000397643 RABL2AQ9UBK7 228 aaPredicted RBP12.48□□□□□ -0.41
CUX2-202ENST00000397643 RABL2BQ9UNT1 228 aa12.48□□□□□ -0.41
CUX2-202ENST00000397643 PLECQ15149 4684 aaKnown RBP12.47□□□□□ -0.41
CUX2-202ENST00000397643 TMEM235A6NFC5 223 aa12.47□□□□□ -0.41
CUX2-202ENST00000397643 GP9P14770 177 aa12.47□□□□□ -0.41
CUX2-202ENST00000397643 CD1BP29016 333 aa12.47□□□□□ -0.41
CUX2-202ENST00000397643 F2RL1P55085 397 aa12.47□□□□□ -0.41
CUX2-202ENST00000397643 OR8H1Q8NGG4 311 aa12.47□□□□□ -0.41
CUX2-202ENST00000397643 OR6Q1Q8NGQ2 317 aa12.47□□□□□ -0.41
CUX2-202ENST00000397643 OR4K15Q8NH41 348 aa12.47□□□□□ -0.41
CUX2-202ENST00000397643 MRPL30Q8TCC3 161 aaKnown RBP12.47□□□□□ -0.41
CUX2-202ENST00000397643 CCDC107Q8WV48 283 aa12.47□□□□□ -0.41
CUX2-202ENST00000397643 DCUN1D4Q92564 292 aa12.47□□□□□ -0.41
CUX2-202ENST00000397643 RASL11BQ9BPW5 248 aa12.47□□□□□ -0.41
CUX2-202ENST00000397643 TRBV6-6A0A0A6YYG2 114 aa12.46□□□□□ -0.41
CUX2-202ENST00000397643 C15orf65H3BRN8 121 aa12.46□□□□□ -0.41
CUX2-202ENST00000397643 NAPSAO96009 420 aa12.46□□□□□ -0.41
CUX2-202ENST00000397643 GZMHP20718 246 aa12.46□□□□□ -0.41
CUX2-202ENST00000397643 C6orf183Q5T699 404 aa12.46□□□□□ -0.41
CUX2-202ENST00000397643 TRAT1Q6PIZ9 186 aa12.46□□□□□ -0.41
CUX2-202ENST00000397643 MOB1BQ7L9L4 216 aa12.46□□□□□ -0.41
CUX2-202ENST00000397643 C8orf31Q8N9H6 132 aa12.46□□□□□ -0.41
CUX2-202ENST00000397643 SETD6Q8TBK2 473 aa12.46□□□□□ -0.41
CUX2-202ENST00000397643 CYYR1Q96J86 154 aa12.46□□□□□ -0.41
CUX2-202ENST00000397643 OR5B12Q96R08 314 aa12.46□□□□□ -0.41
CUX2-202ENST00000397643 HDHD3Q9BSH5 251 aaPredicted RBP12.46□□□□□ -0.41
CUX2-202ENST00000397643 KRTAP17-1Q9BYP8 105 aa12.46□□□□□ -0.41
CUX2-202ENST00000397643 RAB9BQ9NP90 201 aa12.46□□□□□ -0.41
CUX2-202ENST00000397643 KCNIP1Q9NZI2 227 aa12.46□□□□□ -0.41
CUX2-202ENST00000397643 MGAT4AQ9UM21 535 aa12.46□□□□□ -0.41
CUX2-202ENST00000397643 VSIG4Q9Y279 399 aa12.46□□□□□ -0.41
CUX2-202ENST00000397643 ALMS1Q8TCU4 4167 aa12.46□□□□□ -0.41
CUX2-202ENST00000397643 FABP12A6NFH5 140 aa12.45□□□□□ -0.42
CUX2-202ENST00000397643 OVOL1O14753 267 aa12.45□□□□□ -0.42
CUX2-202ENST00000397643 IGLV1-40P01703 118 aa12.45□□□□□ -0.42
CUX2-202ENST00000397643 HLA-DQB1P01920 261 aa12.45□□□□□ -0.42
CUX2-202ENST00000397643 OR5H8P0DN80 308 aa12.45□□□□□ -0.42
CUX2-202ENST00000397643 DTYMKP23919 212 aa12.45□□□□□ -0.42
CUX2-202ENST00000397643 PRSS3P35030 304 aa12.45□□□□□ -0.42
CUX2-202ENST00000397643 IL18Q14116 193 aa12.45□□□□□ -0.42
CUX2-202ENST00000397643 SNX29P2Q8IUI4 249 aa12.45□□□□□ -0.42
CUX2-202ENST00000397643 UBALD1Q8TB05 177 aa12.45□□□□□ -0.42
CUX2-202ENST00000397643 GFOD1Q9NXC2 390 aa12.45□□□□□ -0.42
CUX2-202ENST00000397643 ELF5Q9UKW6 265 aaPredicted RBP12.45□□□□□ -0.42
CUX2-202ENST00000397643 G3V318 75 aa12.44□□□□□ -0.42
CUX2-202ENST00000397643 SLC31A2O15432 143 aa12.44□□□□□ -0.42
CUX2-202ENST00000397643 SAP30O75446 220 aa12.44□□□□□ -0.42
CUX2-202ENST00000397643 FCGR3AP08637 254 aa12.44□□□□□ -0.42
CUX2-202ENST00000397643 CBX5P45973 191 aa12.44□□□□□ -0.42
CUX2-202ENST00000397643 ZNF137PP52743 207 aa12.44□□□□□ -0.42
CUX2-202ENST00000397643 SPANXN2Q5MJ10 180 aa12.44□□□□□ -0.42
CUX2-202ENST00000397643 PYHIN1Q6K0P9 492 aa12.44□□□□□ -0.42
CUX2-202ENST00000397643 ZNF880Q6PDB4 577 aa12.44□□□□□ -0.42
CUX2-202ENST00000397643 FAM131AQ6UXB0 335 aa12.44□□□□□ -0.42
CUX2-202ENST00000397643 LINC00299Q6ZSB3 139 aa12.44□□□□□ -0.42
CUX2-202ENST00000397643 ZNF554Q86TJ5 538 aa12.44□□□□□ -0.42
CUX2-202ENST00000397643 OR52M1Q8NGK5 317 aa12.44□□□□□ -0.42
CUX2-202ENST00000397643 NUDCD2Q8WVJ2 157 aa12.44□□□□□ -0.42
CUX2-202ENST00000397643 DLX4Q92988 240 aaPredicted RBP12.44□□□□□ -0.42
CUX2-202ENST00000397643 ALX4Q9H161 411 aaPredicted RBP12.44□□□□□ -0.42
CUX2-202ENST00000397643 SCPEP1Q9HB40 452 aa12.44□□□□□ -0.42
CUX2-202ENST00000397643 Q9N2K0 584 aa12.44□□□□□ -0.42
CUX2-202ENST00000397643 MBNL3Q9NUK0 354 aaKnown RBP12.44□□□□□ -0.42
CUX2-202ENST00000397643 ZNF107Q9UII5 783 aaPredicted RBP12.44□□□□□ -0.42
CUX2-202ENST00000397643 WSB1Q9Y6I7 421 aa12.44□□□□□ -0.42
CUX2-202ENST00000397643 SULT1C2O00338 296 aa12.43□□□□□ -0.42
CUX2-202ENST00000397643 SPINT2O43291 252 aa12.43□□□□□ -0.42
CUX2-202ENST00000397643 ORC5O43913 435 aa12.43□□□□□ -0.42
CUX2-202ENST00000397643 PTHLHP12272 177 aa12.43□□□□□ -0.42
CUX2-202ENST00000397643 RCC1P18754 421 aaPredicted RBP12.43□□□□□ -0.42
CUX2-202ENST00000397643 MRPS10P82664 201 aaKnown RBP12.43□□□□□ -0.42
CUX2-202ENST00000397643 SRSF7Q16629 238 aaKnown RBP eCLIP12.43□□□□□ -0.42
CUX2-202ENST00000397643 CCDC190Q86UF4 302 aa12.43□□□□□ -0.42
CUX2-202ENST00000397643 ZNF439Q8NDP4 499 aa12.43□□□□□ -0.42
CUX2-202ENST00000397643 ARL11Q969Q4 196 aa12.43□□□□□ -0.42
CUX2-202ENST00000397643 TAF9BQ9HBM6 251 aa12.43□□□□□ -0.42
CUX2-202ENST00000397643 IGHV3-43A0A0B4J1X8 118 aa12.42□□□□□ -0.42
CUX2-202ENST00000397643 C12orf77C9JDV5 145 aa12.42□□□□□ -0.42
CUX2-202ENST00000397643 SDCBPO00560 298 aaPredicted RBP12.42□□□□□ -0.42
CUX2-202ENST00000397643 ATP6V0E1O15342 81 aa12.42□□□□□ -0.42
CUX2-202ENST00000397643 SSX5O60225 188 aa12.42□□□□□ -0.42
CUX2-202ENST00000397643 IGHV3-43DP0DP04 118 aa12.42□□□□□ -0.42
CUX2-202ENST00000397643 PTBP1P26599 531 aaKnown RBP eCLIP12.42□□□□□ -0.42
CUX2-202ENST00000397643 SLURP1P55000 103 aa12.42□□□□□ -0.42
CUX2-202ENST00000397643 ACSM6Q6P461 480 aa12.42□□□□□ -0.42
CUX2-202ENST00000397643 SLC25A48Q6ZT89 311 aaKnown RBP12.42□□□□□ -0.42
CUX2-202ENST00000397643 Q8N1Y9 231 aa12.42□□□□□ -0.42
CUX2-202ENST00000397643 ABHD1Q96SE0 405 aa12.42□□□□□ -0.42
CUX2-202ENST00000397643 SOSTQ9BQB4 213 aa12.42□□□□□ -0.42
CUX2-202ENST00000397643 ST6GALNAC5Q9BVH7 336 aa12.42□□□□□ -0.42
CUX2-202ENST00000397643 OR51J1Q9H342 316 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 154.5 ms