RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 A0A1W2PPC4 97 aa11.36□□□□□ -0.59
CCDC88C-201ENST00000331194 OR5G3P0C626 314 aa11.36□□□□□ -0.59
CCDC88C-201ENST00000331194 UBE2NP61088 152 aaKnown RBP11.36□□□□□ -0.59
CCDC88C-201ENST00000331194 TGFBR3Q03167 851 aa11.36□□□□□ -0.59
CCDC88C-201ENST00000331194 HLA-DRB5Q30154 266 aa11.36□□□□□ -0.59
CCDC88C-201ENST00000331194 RIPPLY2Q5TAB7 128 aa11.36□□□□□ -0.59
CCDC88C-201ENST00000331194 UNQ5815/PRO19632Q6UWF5 114 aa11.36□□□□□ -0.59
CCDC88C-201ENST00000331194 ZDHHC16Q969W1 377 aa11.36□□□□□ -0.59
CCDC88C-201ENST00000331194 SFRP2Q96HF1 295 aa11.36□□□□□ -0.59
CCDC88C-201ENST00000331194 WNT10AQ9GZT5 417 aa11.36□□□□□ -0.59
CCDC88C-201ENST00000331194 CHTOPQ9Y3Y2 248 aaKnown RBP11.36□□□□□ -0.59
CCDC88C-201ENST00000331194 KIAA1644Q3SXP7 199 aa11.35□□□□□ -0.59
CCDC88C-201ENST00000331194 OR56B2PQ8NGI1 322 aa11.35□□□□□ -0.59
CCDC88C-201ENST00000331194 PSMF1Q92530 271 aa11.35□□□□□ -0.59
CCDC88C-201ENST00000331194 PHF7Q9BWX1 381 aaPredicted RBP11.35□□□□□ -0.59
CCDC88C-201ENST00000331194 MRPL18Q9H0U6 180 aaKnown RBP11.35□□□□□ -0.59
CCDC88C-201ENST00000331194 IGHV1OR21-1A0A087WYE8 117 aa11.35□□□□□ -0.59
CCDC88C-201ENST00000331194 CBR3O75828 277 aa11.35□□□□□ -0.59
CCDC88C-201ENST00000331194 KRASP01116 189 aa11.35□□□□□ -0.59
CCDC88C-201ENST00000331194 RAC2P15153 192 aa11.35□□□□□ -0.59
CCDC88C-201ENST00000331194 ATP6V1FQ16864 119 aa11.35□□□□□ -0.59
CCDC88C-201ENST00000331194 ACSF3Q4G176 576 aaPredicted RBP11.35□□□□□ -0.59
CCDC88C-201ENST00000331194 SPATA45Q537H7 98 aa11.35□□□□□ -0.59
CCDC88C-201ENST00000331194 KRTCAP3Q53RY4 240 aa11.35□□□□□ -0.59
CCDC88C-201ENST00000331194 C9orf135Q5VTT2 229 aa11.35□□□□□ -0.59
CCDC88C-201ENST00000331194 YLPM1P49750 1951 aaKnown RBP11.35□□□□□ -0.59
CCDC88C-201ENST00000331194 A0A0J9YW62 118 aa11.35□□□□□ -0.59
CCDC88C-201ENST00000331194 CIDEAO60543 219 aa11.35□□□□□ -0.59
CCDC88C-201ENST00000331194 VENTXO95231 258 aa11.35□□□□□ -0.59
CCDC88C-201ENST00000331194 TDGF1P13385 188 aa11.35□□□□□ -0.59
CCDC88C-201ENST00000331194 HINT1P49773 126 aaPredicted RBP11.35□□□□□ -0.59
CCDC88C-201ENST00000331194 FGFRL1Q8N441 504 aa11.35□□□□□ -0.59
CCDC88C-201ENST00000331194 Q8N976 141 aa11.35□□□□□ -0.59
CCDC88C-201ENST00000331194 CDX2Q99626 313 aaPredicted RBP11.35□□□□□ -0.59
CCDC88C-201ENST00000331194 KIR2DS1A0A191URI9 304 aa11.34□□□□□ -0.59
CCDC88C-201ENST00000331194 DIRC3C9JPN6 131 aa11.34□□□□□ -0.59
CCDC88C-201ENST00000331194 RAMP3O60896 148 aa11.34□□□□□ -0.59
CCDC88C-201ENST00000331194 KIR2DS4P43632 304 aa11.34□□□□□ -0.59
CCDC88C-201ENST00000331194 IER3P46695 156 aa11.34□□□□□ -0.59
CCDC88C-201ENST00000331194 MRPS21P82921 87 aaKnown RBP11.34□□□□□ -0.59
CCDC88C-201ENST00000331194 KIR2DS1Q14954 304 aa11.34□□□□□ -0.59
CCDC88C-201ENST00000331194 RNF138Q8WVD3 245 aa11.34□□□□□ -0.59
CCDC88C-201ENST00000331194 GSX1Q9H4S2 264 aaPredicted RBP11.34□□□□□ -0.59
CCDC88C-201ENST00000331194 OR6C6A6NF89 314 aa11.34□□□□□ -0.59
CCDC88C-201ENST00000331194 PIAS2O75928 621 aa11.34□□□□□ -0.59
CCDC88C-201ENST00000331194 KITLGP21583 273 aa11.34□□□□□ -0.59
CCDC88C-201ENST00000331194 KLF3P57682 345 aaPredicted RBP11.34□□□□□ -0.59
CCDC88C-201ENST00000331194 SLC35B1P78383 322 aa11.34□□□□□ -0.59
CCDC88C-201ENST00000331194 ZNF90Q03938 601 aa11.34□□□□□ -0.59
CCDC88C-201ENST00000331194 FOXL1Q12952 345 aa11.34□□□□□ -0.59
CCDC88C-201ENST00000331194 PRDX4Q13162 271 aa11.34□□□□□ -0.59
CCDC88C-201ENST00000331194 Q6ZN92 141 aa11.34□□□□□ -0.59
CCDC88C-201ENST00000331194 OCC1Q8TAD7 63 aa11.34□□□□□ -0.59
CCDC88C-201ENST00000331194 IGHV3-64DA0A0J9YX35 117 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 TMEM238C9JI98 176 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 G6PCP35575 357 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 PI4KAP42356 2102 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 LINC00205P59089 165 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 TMEM14EPQ6UXP3 125 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 MCEMP1Q8IX19 187 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 TXN2Q99757 166 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 NPCDR1Q9BY65 106 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 TMEM38BQ9NVV0 291 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 WIPI2Q9Y4P8 454 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 ZG16O60844 167 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 S100GP29377 79 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 PAFAH1B2P68402 229 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 TRIM61Q5EBN2 209 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 Q6ZS49 121 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 SAXO1Q8IYX7 474 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 SPACA9Q96E40 222 aaPredicted RBP11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 LRFN3Q9BTN0 628 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 PCED1AQ9H1Q7 454 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 MED12LQ86YW9 2145 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 CACNA1HO95180 2353 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 LOC105371242A0A075B767 164 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 IGLV3-32A0A0A0MS00 114 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 MDFIC2A0A1B0GVS7 189 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 F6UZH7 168 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 FCN1O00602 326 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 PMCHP20382 165 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 COX5AP20674 150 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 EDDM3BP56851 147 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 FGF12P61328 243 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 ZNF816Q0VGE8 651 aaPredicted RBP11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 CEACAM16Q2WEN9 425 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 OR2H1Q9GZK4 316 aa11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 CHCHD2Q9Y6H1 151 aaPredicted RBP11.33□□□□□ -0.6
CCDC88C-201ENST00000331194 BOD1L1Q8NFC6 3051 aa11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 SCO2A0A1W2PP80 73 aa11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 HYPMO75409 117 aa11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 ZFAND5O76080 213 aa11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 SERPINA7P05543 415 aa11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 SLC25A6P12236 298 aa11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 YPEL3P61236 119 aaPredicted RBP11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 FADS6Q8N9I5 356 aa11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 OR5A2Q8NGI9 324 aa11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 LSM10Q969L4 123 aaKnown RBP11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 RCHY1Q96PM5 261 aa11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 LAMTOR2Q9Y2Q5 125 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms