RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 HELTA6NFD8 242 aa12.55□□□□□ -0.4
TCOF1-201ENST00000323668 LRRC3CA6NJW4 275 aa12.55□□□□□ -0.4
TCOF1-201ENST00000323668 ZNF716A6NP11 495 aa12.55□□□□□ -0.4
TCOF1-201ENST00000323668 OR5AU1Q8NGC0 362 aa12.55□□□□□ -0.4
TCOF1-201ENST00000323668 WBP1Q96G27 269 aa12.55□□□□□ -0.4
TCOF1-201ENST00000323668 SEMA5BQ9P283 1151 aa12.55□□□□□ -0.4
TCOF1-201ENST00000323668 ZNF835Q9Y2P0 537 aa12.55□□□□□ -0.4
TCOF1-201ENST00000323668 PXMP4Q9Y6I8 212 aa12.55□□□□□ -0.4
TCOF1-201ENST00000323668 RHBDL1O75783 438 aa12.55□□□□□ -0.4
TCOF1-201ENST00000323668 S1PR2O95136 353 aa12.55□□□□□ -0.4
TCOF1-201ENST00000323668 AGAP20933 346 aa12.55□□□□□ -0.4
TCOF1-201ENST00000323668 GAMTQ14353 236 aa12.55□□□□□ -0.4
TCOF1-201ENST00000323668 HEPN1Q6WQI6 88 aa12.55□□□□□ -0.4
TCOF1-201ENST00000323668 TMEM204Q9BSN7 226 aa12.55□□□□□ -0.4
TCOF1-201ENST00000323668 ZNF729A6NN14 1252 aaPredicted RBP12.55□□□□□ -0.4
TCOF1-201ENST00000323668 OTX1P32242 354 aaPredicted RBP12.55□□□□□ -0.4
TCOF1-201ENST00000323668 TCL1AP56279 114 aa12.55□□□□□ -0.4
TCOF1-201ENST00000323668 CYP2G1PQ6ZSU1 146 aa12.55□□□□□ -0.4
TCOF1-201ENST00000323668 hADV38S2A0JD32 116 aa12.54□□□□□ -0.4
TCOF1-201ENST00000323668 PRRG2O14669 202 aa12.54□□□□□ -0.4
TCOF1-201ENST00000323668 NDUFA2O43678 99 aa12.54□□□□□ -0.4
TCOF1-201ENST00000323668 OPRK1P41145 380 aa12.54□□□□□ -0.4
TCOF1-201ENST00000323668 IER3P46695 156 aa12.54□□□□□ -0.4
TCOF1-201ENST00000323668 HNRNPA3P51991 378 aaKnown RBP12.54□□□□□ -0.4
TCOF1-201ENST00000323668 TNFAIP6P98066 277 aaPredicted RBP12.54□□□□□ -0.4
TCOF1-201ENST00000323668 MARCH11A6NNE9 402 aa12.54□□□□□ -0.4
TCOF1-201ENST00000323668 SNURFLB1AK76 121 aa12.54□□□□□ -0.4
TCOF1-201ENST00000323668 HLA-DRB5Q30154 266 aa12.54□□□□□ -0.4
TCOF1-201ENST00000323668 ABLIM2Q6H8Q1 611 aa12.54□□□□□ -0.4
TCOF1-201ENST00000323668 MOGAT3Q86VF5 341 aa12.54□□□□□ -0.4
TCOF1-201ENST00000323668 ZNF525Q8N782 197 aa12.54□□□□□ -0.4
TCOF1-201ENST00000323668 SDF2L1Q9HCN8 221 aa12.54□□□□□ -0.4
TCOF1-201ENST00000323668 WIPI2Q9Y4P8 454 aa12.54□□□□□ -0.4
TCOF1-201ENST00000323668 TRAV38-1A0A0B4J264 116 aa12.54□□□□□ -0.4
TCOF1-201ENST00000323668 UBE2L3P68036 154 aaKnown RBP12.54□□□□□ -0.4
TCOF1-201ENST00000323668 FAM214BQ7L5A3 538 aa12.54□□□□□ -0.4
TCOF1-201ENST00000323668 VMA21Q3ZAQ7 101 aa12.54□□□□□ -0.4
TCOF1-201ENST00000323668 OR1L6Q8NGR2 347 aa12.54□□□□□ -0.4
TCOF1-201ENST00000323668 FGFBP3Q8TAT2 258 aa12.54□□□□□ -0.4
TCOF1-201ENST00000323668 PRNDQ9UKY0 176 aa12.54□□□□□ -0.4
TCOF1-201ENST00000323668 TIMM9Q9Y5J7 89 aa12.54□□□□□ -0.4
TCOF1-201ENST00000323668 MGST3O14880 152 aa12.53□□□□□ -0.4
TCOF1-201ENST00000323668 GNB1P62873 340 aa12.53□□□□□ -0.4
TCOF1-201ENST00000323668 RBPJQ06330 500 aa12.53□□□□□ -0.4
TCOF1-201ENST00000323668 GTF3AQ92664 365 aaKnown RBP12.53□□□□□ -0.4
TCOF1-201ENST00000323668 CELA3AP09093 270 aa12.53□□□□□ -0.4
TCOF1-201ENST00000323668 SLC24A4Q8NFF2 622 aa12.53□□□□□ -0.4
TCOF1-201ENST00000323668 C9JQL5 133 aa12.53□□□□□ -0.4
TCOF1-201ENST00000323668 TMEM183AQ8IXX5 376 aa12.53□□□□□ -0.4
TCOF1-201ENST00000323668 TBX15Q96SF7 602 aa12.53□□□□□ -0.4
TCOF1-201ENST00000323668 EP300Q09472 2414 aaPredicted RBP12.53□□□□□ -0.4
TCOF1-201ENST00000323668 ZNF891A8MT65 544 aaPredicted RBP12.53□□□□□ -0.4
TCOF1-201ENST00000323668 ELOBQ15370 118 aa12.53□□□□□ -0.4
TCOF1-201ENST00000323668 ANAPC10Q9UM13 185 aa12.53□□□□□ -0.4
TCOF1-201ENST00000323668 DOCK8Q8NF50 2099 aa12.52□□□□□ -0.4
TCOF1-201ENST00000323668 KLF7O75840 302 aaPredicted RBP12.52□□□□□ -0.4
TCOF1-201ENST00000323668 DDA1Q9BW61 102 aa12.52□□□□□ -0.4
TCOF1-201ENST00000323668 ZNF703Q9H7S9 590 aaPredicted RBP12.52□□□□□ -0.4
TCOF1-201ENST00000323668 ZNF106Q9H2Y7 1883 aaKnown RBP12.52□□□□□ -0.41
TCOF1-201ENST00000323668 CT45A10P0DMU9 189 aa12.52□□□□□ -0.41
TCOF1-201ENST00000323668 BHLHA15Q7RTS1 189 aaPredicted RBP12.52□□□□□ -0.41
TCOF1-201ENST00000323668 KLF14Q8TD94 323 aaPredicted RBP12.52□□□□□ -0.41
TCOF1-201ENST00000323668 GAL3ST2Q9H3Q3 398 aa12.52□□□□□ -0.41
TCOF1-201ENST00000323668 TMEM265A0A087WTH1 108 aa12.52□□□□□ -0.41
TCOF1-201ENST00000323668 WIPF3A6NGB9 483 aa12.52□□□□□ -0.41
TCOF1-201ENST00000323668 J3QR06 171 aa12.52□□□□□ -0.41
TCOF1-201ENST00000323668 J3QW42 95 aa12.52□□□□□ -0.41
TCOF1-201ENST00000323668 MPV17P39210 176 aa12.52□□□□□ -0.41
TCOF1-201ENST00000323668 PAX5Q02548 391 aa12.52□□□□□ -0.41
TCOF1-201ENST00000323668 MIC13Q5XKP0 118 aa12.52□□□□□ -0.41
TCOF1-201ENST00000323668 COL4A3Q01955 1670 aa12.52□□□□□ -0.41
TCOF1-201ENST00000323668 GPR179Q6PRD1 2367 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 ODAMA1E959 279 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 HIST1H2BKO60814 126 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 HIST1H2BJP06899 126 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 HIST1H2BOP23527 126 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 HIST1H2BBP33778 126 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 HIST1H2BDP58876 126 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 HIST1H2BCP62807 126 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 HIST2H2BEQ16778 126 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.51□□□□□ -0.41
TCOF1-201ENST00000323668 HIST1H2BHQ93079 126 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 HIST1H2BNQ99877 126 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 HIST1H2BMQ99879 126 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 IL19Q9UHD0 177 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 PI4KAP42356 2102 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 E9PLN8 166 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 M0QZK8 103 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 NDUFB3O43676 98 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 GGCTO75223 188 aaKnown RBP12.51□□□□□ -0.41
TCOF1-201ENST00000323668 SIGLEC12Q96PQ1 595 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 RNF2Q99496 336 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 A0A1B0GW64 132 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 VENTXO95231 258 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 OR1L4Q8NGR5 311 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 CDX2Q99626 313 aaPredicted RBP12.51□□□□□ -0.41
TCOF1-201ENST00000323668 MRPS18CQ9Y3D5 142 aaKnown RBP12.51□□□□□ -0.41
TCOF1-201ENST00000323668 PAM16Q9Y3D7 125 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 ARL2-SNX15V9GYD0 113 aa12.51□□□□□ -0.41
TCOF1-201ENST00000323668 ETV2O00321 342 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms