RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 RALGAPA2Q2PPJ7 1873 aa9.92□□□□□ -0.82
VPS39-201ENST00000318006 IL11P20809 199 aa9.92□□□□□ -0.82
VPS39-201ENST00000318006 OTX1P32242 354 aaPredicted RBP9.92□□□□□ -0.82
VPS39-201ENST00000318006 PQLC2Q6ZP29 291 aa9.92□□□□□ -0.82
VPS39-201ENST00000318006 GUCD1Q96NT3 240 aa9.92□□□□□ -0.82
VPS39-201ENST00000318006 IL36RNQ9UBH0 155 aa9.92□□□□□ -0.82
VPS39-201ENST00000318006 DNAJC13O75165 2243 aa9.92□□□□□ -0.82
VPS39-201ENST00000318006 APC2O95996 2303 aa9.91□□□□□ -0.82
VPS39-201ENST00000318006 LOC389332A0A1B0GUA5 103 aa9.91□□□□□ -0.82
VPS39-201ENST00000318006 CELA2AP08217 269 aa9.91□□□□□ -0.82
VPS39-201ENST00000318006 IGLV3-21P80748 117 aaPredicted RBP9.91□□□□□ -0.82
VPS39-201ENST00000318006 SAPCD1Q5SSQ6 148 aa9.91□□□□□ -0.82
VPS39-201ENST00000318006 CYP2G1PQ6ZSU1 146 aa9.91□□□□□ -0.82
VPS39-201ENST00000318006 SNRNP40Q96DI7 357 aaKnown RBP9.91□□□□□ -0.82
VPS39-201ENST00000318006 SPTBP11277 2137 aa9.91□□□□□ -0.82
VPS39-201ENST00000318006 IGHV1-45A0A0A0MS14 117 aa9.91□□□□□ -0.82
VPS39-201ENST00000318006 IGLV1-36A0A0B4J1U3 117 aa9.91□□□□□ -0.82
VPS39-201ENST00000318006 SPAARA0A1B0GVQ0 90 aa9.91□□□□□ -0.82
VPS39-201ENST00000318006 DNLZQ5SXM8 178 aa9.91□□□□□ -0.82
VPS39-201ENST00000318006 FAM27BQ5VT28 67 aa9.91□□□□□ -0.82
VPS39-201ENST00000318006 TRPM7Q96QT4 1865 aa9.91□□□□□ -0.82
VPS39-201ENST00000318006 LMX1BO60663 402 aa9.91□□□□□ -0.82
VPS39-201ENST00000318006 MAS1LP35410 378 aa9.91□□□□□ -0.82
VPS39-201ENST00000318006 TNFAIP6P98066 277 aaPredicted RBP9.91□□□□□ -0.82
VPS39-201ENST00000318006 TNXAQ16473 311 aa9.91□□□□□ -0.82
VPS39-201ENST00000318006 TTC32Q5I0X7 151 aa9.91□□□□□ -0.82
VPS39-201ENST00000318006 TMEM136Q6ZRR5 245 aa9.91□□□□□ -0.82
VPS39-201ENST00000318006 MUC15Q8N387 334 aa9.91□□□□□ -0.82
VPS39-201ENST00000318006 J3QR06 171 aa9.91□□□□□ -0.82
VPS39-201ENST00000318006 PGLYRP1O75594 196 aaPredicted RBP9.91□□□□□ -0.82
VPS39-201ENST00000318006 CBLN1P23435 193 aa9.91□□□□□ -0.82
VPS39-201ENST00000318006 TNFSF10P50591 281 aa9.91□□□□□ -0.82
VPS39-201ENST00000318006 APOBEC4Q8WW27 367 aaKnown RBP9.91□□□□□ -0.82
VPS39-201ENST00000318006 WDYHV1Q96HA8 205 aa9.91□□□□□ -0.82
VPS39-201ENST00000318006 PILRBQ9UKJ0 227 aa9.91□□□□□ -0.82
VPS39-201ENST00000318006 TRAV38-1A0A0B4J264 116 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 TMEM14DPA8MWL7 114 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 MS4A18H0YCH9 400 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 MNX1P50219 401 aaPredicted RBP9.9□□□□□ -0.82
VPS39-201ENST00000318006 MS4A18Q3C1V0 323 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 LINC01590Q5TEZ4 76 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 LSM10Q969L4 123 aaKnown RBP9.9□□□□□ -0.82
VPS39-201ENST00000318006 M0R3E3 92 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 SCTP09683 121 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 UCP3P55916 312 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 FAM216AQ8WUB2 273 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 SPSB4Q96A44 273 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 RPRMQ9NS64 109 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 FAM90A10PA6NDY2 464 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 FAM90A18PA6NE21 464 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 FAM90A16PA6NEW6 464 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 FAM90A20PA6NIJ5 464 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 FAM90A8PA6NJQ4 464 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 FAM90A7PA6NKC0 464 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 FAM90A22PA8MWA6 464 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 FAM90A12PA8MX19 464 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 FAM90A5PA8MXJ8 464 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 FAM90A23PA8MXZ1 464 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 FAM90A15PP0C7V4 464 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 FAM90A13PP0C7W8 464 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 FAM90A14PP0C7W9 464 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 FAM90A24PP0C7X0 464 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 SPINK2P20155 84 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 NPBWR2P48146 333 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 TNFRSF9Q07011 255 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 FBXW9Q5XUX1 488 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 LURAP1LQ8IV03 231 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 NFAM1Q8NET5 270 aaPredicted RBP9.9□□□□□ -0.82
VPS39-201ENST00000318006 OR1L8Q8NGR8 309 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 TMEM70Q9BUB7 260 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 TTTY12Q9BZ98 90 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 SVILO95425 2214 aa9.9□□□□□ -0.82
VPS39-201ENST00000318006 FGF12P61328 243 aa9.9□□□□□ -0.83
VPS39-201ENST00000318006 VWCEQ96DN2 955 aa9.9□□□□□ -0.83
VPS39-201ENST00000318006 KCNK17Q96T54 332 aa9.9□□□□□ -0.83
VPS39-201ENST00000318006 CLDN16Q9Y5I7 305 aa9.9□□□□□ -0.83
VPS39-201ENST00000318006 C3orf80F5H4A9 247 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 FGF16O43320 207 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 FXYD3Q14802 87 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 MIC13Q5XKP0 118 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 BHLHA15Q7RTS1 189 aaPredicted RBP9.89□□□□□ -0.83
VPS39-201ENST00000318006 BIVMQ86UB2 503 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 RASL11BQ9BPW5 248 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 TDRD6O60522 2096 aaKnown RBP9.89□□□□□ -0.83
VPS39-201ENST00000318006 TMSB15BA0A087X1C1 80 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 LOC390937A0A1W2PQ73 354 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 A0A1W2PQM1 296 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 RAMP1O60894 148 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 KIR2DL2P43627 348 aaPredicted RBP9.89□□□□□ -0.83
VPS39-201ENST00000318006 JOSD1Q15040 202 aaPredicted RBP9.89□□□□□ -0.83
VPS39-201ENST00000318006 RCC1LQ96I51 464 aaKnown RBP9.89□□□□□ -0.83
VPS39-201ENST00000318006 C14orf144Q96I85 54 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 CHRNA10Q9GZZ6 450 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 HEXA-AS1Q9H8Q6 139 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 ZNF71Q9NQZ8 489 aaPredicted RBP9.89□□□□□ -0.83
VPS39-201ENST00000318006 HS3ST3B1Q9Y662 390 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 WDR81Q562E7 1941 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 PRNTQ86SH4 94 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 OR10AG1Q8NH19 301 aa9.89□□□□□ -0.83
VPS39-201ENST00000318006 LOXL4Q96JB6 756 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms