RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 SLC35E4Q6ICL7 350 aa16.48■□□□□ 0.23
UPF1-201ENST00000262803 SLC25A45Q8N413 288 aa16.48■□□□□ 0.23
UPF1-201ENST00000262803 ZNF738Q8NE65 137 aa16.48■□□□□ 0.23
UPF1-201ENST00000262803 LSM10Q969L4 123 aaKnown RBP16.48■□□□□ 0.23
UPF1-201ENST00000262803 NRIP2Q9BQI9 281 aa16.48■□□□□ 0.23
UPF1-201ENST00000262803 LDLRAD3Q86YD5 345 aa16.48■□□□□ 0.23
UPF1-201ENST00000262803 OR2D3Q8NGH3 330 aa16.48■□□□□ 0.23
UPF1-201ENST00000262803 CLEC7AQ9BXN2 247 aa16.48■□□□□ 0.23
UPF1-201ENST00000262803 COL25A1Q9BXS0 654 aaPredicted RBP16.48■□□□□ 0.23
UPF1-201ENST00000262803 PTBP3O95758 552 aaKnown RBP16.47■□□□□ 0.23
UPF1-201ENST00000262803 UQCRFS1P47985 274 aa16.47■□□□□ 0.23
UPF1-201ENST00000262803 ATP5J2P56134 94 aa16.47■□□□□ 0.23
UPF1-201ENST00000262803 NEU4Q8WWR8 484 aaPredicted RBP16.47■□□□□ 0.23
UPF1-201ENST00000262803 CTHRC1Q96CG8 243 aa16.47■□□□□ 0.23
UPF1-201ENST00000262803 TUBD1Q9UJT1 453 aa16.47■□□□□ 0.23
UPF1-201ENST00000262803 BCL2P10415 239 aa16.47■□□□□ 0.23
UPF1-201ENST00000262803 NAT1P18440 290 aa16.47■□□□□ 0.23
UPF1-201ENST00000262803 WDR25Q64LD2 544 aaPredicted RBP16.47■□□□□ 0.23
UPF1-201ENST00000262803 C1orf162Q8NEQ5 155 aaPredicted RBP16.47■□□□□ 0.23
UPF1-201ENST00000262803 CCL19Q99731 98 aa16.47■□□□□ 0.23
UPF1-201ENST00000262803 SH3BGRL3Q9H299 93 aa16.47■□□□□ 0.23
UPF1-201ENST00000262803 HTN1P15515 57 aa16.47■□□□□ 0.23
UPF1-201ENST00000262803 IGSF11Q5DX21 431 aa16.47■□□□□ 0.23
UPF1-201ENST00000262803 PACRGQ96M98 296 aaPredicted RBP16.47■□□□□ 0.23
UPF1-201ENST00000262803 SMIM6P0DI80 62 aa16.46■□□□□ 0.23
UPF1-201ENST00000262803 UNQ9370/PRO34162Q6UXP9 181 aa16.46■□□□□ 0.23
UPF1-201ENST00000262803 PRNTQ86SH4 94 aa16.46■□□□□ 0.23
UPF1-201ENST00000262803 MRPL32Q9BYC8 188 aaKnown RBP16.46■□□□□ 0.23
UPF1-201ENST00000262803 AUP1Q9Y679 476 aa16.46■□□□□ 0.23
UPF1-201ENST00000262803 MYO16Q9Y6X6 1858 aa16.46■□□□□ 0.23
UPF1-201ENST00000262803 SHANK3Q9BYB0 1731 aa16.46■□□□□ 0.23
UPF1-201ENST00000262803 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.46■□□□□ 0.23
UPF1-201ENST00000262803 M0R3E3 92 aa16.46■□□□□ 0.23
UPF1-201ENST00000262803 TMEM229AB2RXF0 380 aa16.46■□□□□ 0.23
UPF1-201ENST00000262803 ERVH48-1M5A8F1 160 aa16.46■□□□□ 0.23
UPF1-201ENST00000262803 FCARP24071 287 aa16.46■□□□□ 0.23
UPF1-201ENST00000262803 RUNX1Q01196 453 aa16.46■□□□□ 0.23
UPF1-201ENST00000262803 CXorf66Q5JRM2 361 aaPredicted RBP16.46■□□□□ 0.23
UPF1-201ENST00000262803 PAPPA-AS1Q5QFB9 102 aa16.46■□□□□ 0.23
UPF1-201ENST00000262803 hCG_38984A0A1B0GV85 526 aa16.46■□□□□ 0.22
UPF1-201ENST00000262803 MUC1P15941 1255 aaPredicted RBP16.46■□□□□ 0.22
UPF1-201ENST00000262803 HSPE1P61604 102 aaKnown RBP16.46■□□□□ 0.22
UPF1-201ENST00000262803 SAMD13Q5VXD3 122 aa16.46■□□□□ 0.22
UPF1-201ENST00000262803 FUT9Q9Y231 359 aa16.46■□□□□ 0.22
UPF1-201ENST00000262803 CTSBP07858 339 aa16.45■□□□□ 0.22
UPF1-201ENST00000262803 C10orf128Q5T292 105 aa16.45■□□□□ 0.22
UPF1-201ENST00000262803 FAM53AQ6NSI3 398 aaPredicted RBP16.45■□□□□ 0.22
UPF1-201ENST00000262803 ZCCHC14Q8WYQ9 949 aaKnown RBP16.45■□□□□ 0.22
UPF1-201ENST00000262803 LRRC37AA6NMS7 1700 aa16.45■□□□□ 0.22
UPF1-201ENST00000262803 COX6CP09669 75 aa16.45■□□□□ 0.22
UPF1-201ENST00000262803 PCOLCEQ15113 449 aa16.45■□□□□ 0.22
UPF1-201ENST00000262803 NRN1LQ496H8 165 aa16.45■□□□□ 0.22
UPF1-201ENST00000262803 MOB4Q9Y3A3 225 aa16.45■□□□□ 0.22
UPF1-201ENST00000262803 IGKV1D-42A0A075B6H8 117 aa16.45■□□□□ 0.22
UPF1-201ENST00000262803 SNURFLB1AK76 121 aa16.45■□□□□ 0.22
UPF1-201ENST00000262803 OVCH2Q7RTZ1 564 aa16.45■□□□□ 0.22
UPF1-201ENST00000262803 TMEM252Q8N6L7 170 aa16.45■□□□□ 0.22
UPF1-201ENST00000262803 OR4C13Q8NGP0 309 aa16.45■□□□□ 0.22
UPF1-201ENST00000262803 HILPDAQ9Y5L2 63 aa16.45■□□□□ 0.22
UPF1-201ENST00000262803 LINC00869P0C866 280 aa16.45■□□□□ 0.22
UPF1-201ENST00000262803 REG1BP48304 166 aa16.45■□□□□ 0.22
UPF1-201ENST00000262803 IFITM2Q01629 132 aa16.45■□□□□ 0.22
UPF1-201ENST00000262803 MRPL54Q6P161 138 aaKnown RBP16.45■□□□□ 0.22
UPF1-201ENST00000262803 ERASQ7Z444 233 aa16.45■□□□□ 0.22
UPF1-201ENST00000262803 RTN4RL2Q86UN3 420 aa16.45■□□□□ 0.22
UPF1-201ENST00000262803 RALYQ9UKM9 306 aaKnown RBP16.45■□□□□ 0.22
UPF1-201ENST00000262803 IGHV1-69-2A0A0G2JMI3 117 aa16.44■□□□□ 0.22
UPF1-201ENST00000262803 APOBEC3AP31941 199 aaPredicted RBP16.44■□□□□ 0.22
UPF1-201ENST00000262803 LINC01590Q5TEZ4 76 aa16.44■□□□□ 0.22
UPF1-201ENST00000262803 LHFPL6Q9Y693 200 aa16.44■□□□□ 0.22
UPF1-201ENST00000262803 WNT5AP41221 380 aa16.44■□□□□ 0.22
UPF1-201ENST00000262803 P2RY4P51582 365 aa16.44■□□□□ 0.22
UPF1-201ENST00000262803 AQP3Q92482 292 aa16.44■□□□□ 0.22
UPF1-201ENST00000262803 TMEM54Q969K7 222 aa16.44■□□□□ 0.22
UPF1-201ENST00000262803 NPDC1Q9NQX5 325 aaPredicted RBP16.44■□□□□ 0.22
UPF1-201ENST00000262803 IGKV3-7A0A075B6H7 116 aa16.44■□□□□ 0.22
UPF1-201ENST00000262803 PRR19A6NJB7 356 aa16.44■□□□□ 0.22
UPF1-201ENST00000262803 NPIPB11E5RHQ5 1161 aa16.44■□□□□ 0.22
UPF1-201ENST00000262803 TIMM23BQ5SRD1 257 aa16.44■□□□□ 0.22
UPF1-201ENST00000262803 TWIST1Q15672 202 aa16.43■□□□□ 0.22
UPF1-201ENST00000262803 ATXN7O15265 892 aaPredicted RBP16.43■□□□□ 0.22
UPF1-201ENST00000262803 RHOVQ96L33 236 aa16.43■□□□□ 0.22
UPF1-201ENST00000262803 QTRT1Q9BXR0 403 aaKnown RBP16.43■□□□□ 0.22
UPF1-201ENST00000262803 J3KRW8 73 aa16.43■□□□□ 0.22
UPF1-201ENST00000262803 TRGC1P0CF51 173 aa16.43■□□□□ 0.22
UPF1-201ENST00000262803 OR11H4Q8NGC9 324 aa16.43■□□□□ 0.22
UPF1-201ENST00000262803 HSPB7Q9UBY9 170 aa16.43■□□□□ 0.22
UPF1-201ENST00000262803 CBY3A6NI87 242 aa16.43■□□□□ 0.22
UPF1-201ENST00000262803 SNRPD3P62318 126 aaKnown RBP16.43■□□□□ 0.22
UPF1-201ENST00000262803 GDF15Q99988 308 aa16.43■□□□□ 0.22
UPF1-201ENST00000262803 AURKAIP1Q9NWT8 199 aaPredicted RBP16.43■□□□□ 0.22
UPF1-201ENST00000262803 A0A087X0M5 115 aa16.43■□□□□ 0.22
UPF1-201ENST00000262803 A0A1B0GX30 115 aa16.43■□□□□ 0.22
UPF1-201ENST00000262803 CD99P14209 185 aa16.43■□□□□ 0.22
UPF1-201ENST00000262803 ZNF146Q15072 292 aa16.43■□□□□ 0.22
UPF1-201ENST00000262803 FAM206AQ9NX38 181 aa16.43■□□□□ 0.22
UPF1-201ENST00000262803 CEACAM1P13688 526 aa16.42■□□□□ 0.22
UPF1-201ENST00000262803 UCP3P55916 312 aa16.42■□□□□ 0.22
UPF1-201ENST00000262803 TPRX1Q8N7U7 411 aa16.42■□□□□ 0.22
UPF1-201ENST00000262803 OR1N2Q8NGR9 330 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms