RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 ZNF705AQ6ZN79 300 aaPredicted RBP3.71□□□□□ -1.81
VPS13C-202ENST00000261517 PPP1R32Q7Z5V6 425 aa3.71□□□□□ -1.81
VPS13C-202ENST00000261517 TMEM123Q8N131 208 aa3.71□□□□□ -1.81
VPS13C-202ENST00000261517 R4GN57 208 aa3.71□□□□□ -1.81
VPS13C-202ENST00000261517 TMEM91Q6ZNR0 172 aa3.71□□□□□ -1.81
VPS13C-202ENST00000261517 OR8I2Q8N0Y5 310 aa3.71□□□□□ -1.81
VPS13C-202ENST00000261517 C9orf62Q8N4C0 152 aa3.71□□□□□ -1.81
VPS13C-202ENST00000261517 DEFB108BQ8NET1 73 aa3.71□□□□□ -1.81
VPS13C-202ENST00000261517 ADAT3Q96EY9 351 aaPredicted RBP3.71□□□□□ -1.81
VPS13C-202ENST00000261517 OPN3Q9H1Y3 402 aaPredicted RBP3.71□□□□□ -1.81
VPS13C-202ENST00000261517 KIF26AQ9ULI4 1882 aaPredicted RBP3.71□□□□□ -1.82
VPS13C-202ENST00000261517 COL6A6A6NMZ7 2263 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 PHOX2AO14813 284 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 CYB5R3P00387 301 aaPredicted RBP3.71□□□□□ -1.82
VPS13C-202ENST00000261517 PDCD1Q15116 288 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 MRPL14Q6P1L8 145 aaKnown RBP3.71□□□□□ -1.82
VPS13C-202ENST00000261517 SPACA5Q96QH8 159 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 TMEM56-RWDD3S4R434 201 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 OTOGLQ3ZCN5 2332 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 KIAA1324LA8MWY0 1029 aaPredicted RBP3.71□□□□□ -1.82
VPS13C-202ENST00000261517 HOXB3P14651 431 aaPredicted RBP3.71□□□□□ -1.82
VPS13C-202ENST00000261517 RPL29P47914 159 aaKnown RBP3.71□□□□□ -1.82
VPS13C-202ENST00000261517 COL10A1Q03692 680 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 RTP5Q14D33 572 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 TMEM177Q53S58 311 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 Q6ZS49 121 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 OR4D11Q8NGI4 311 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 OR4P4Q8NGL7 312 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 VCX2Q9H322 139 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 MRPL22Q9NWU5 206 aaKnown RBP3.71□□□□□ -1.82
VPS13C-202ENST00000261517 CEP192Q8TEP8 1941 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 CCSO14618 274 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 CDIPTO14735 213 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 IGKV1D-16P01601 117 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 MBNL2Q5VZF2 373 aaKnown RBP3.71□□□□□ -1.82
VPS13C-202ENST00000261517 DHRS11Q6UWP2 260 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 ST6GAL2Q96JF0 529 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 ASCL3Q9NQ33 180 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 BOLA1Q9Y3E2 137 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 LOC105371242A0A075B767 164 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 KLF7O75840 302 aaPredicted RBP3.71□□□□□ -1.82
VPS13C-202ENST00000261517 CELA2BP08218 269 aaPredicted RBP3.71□□□□□ -1.82
VPS13C-202ENST00000261517 SNRPD3P62318 126 aaKnown RBP3.71□□□□□ -1.82
VPS13C-202ENST00000261517 TNFRSF9Q07011 255 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 PDZD11Q5EBL8 140 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 TRBV6-6A0A0A6YYG2 114 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 A0A1W2PPQ1 181 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 NPIPB11E5RHQ5 1161 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 SOD3P08294 240 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 CXorf66Q5JRM2 361 aaPredicted RBP3.71□□□□□ -1.82
VPS13C-202ENST00000261517 TMEM78Q5T7P6 136 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 TSPO2Q5TGU0 170 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 C16orf82Q7Z2V1 217 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 PRSS3P2Q8NHM4 247 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 PRR7Q8TB68 274 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 SPSB4Q96A44 273 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 ZNF230Q9UIE0 474 aaPredicted RBP3.71□□□□□ -1.82
VPS13C-202ENST00000261517 TIMM8BQ9Y5J9 83 aaPredicted RBP3.71□□□□□ -1.82
VPS13C-202ENST00000261517 TNFSF12O43508 249 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 CHST1O43916 411 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 YPEL1O60688 119 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 HKR1P10072 659 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 FAM27D1Q5T7N8 215 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 IGF2-ASQ6U949 168 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 OLIG3Q7RTU3 272 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 OR4B1Q8NGF8 309 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 YPEL2Q96QA6 119 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 PAXXQ9BUH6 204 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 MS4A7Q9GZW8 240 aaPredicted RBP3.71□□□□□ -1.82
VPS13C-202ENST00000261517 BET1LQ9NYM9 111 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 CEP295Q9C0D2 2601 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 ARG1P05089 322 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 OR5AL1P0C617 328 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 CD99P14209 185 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 LRTM2Q8N967 370 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 ELF5Q9UKW6 265 aaPredicted RBP3.71□□□□□ -1.82
VPS13C-202ENST00000261517 A0A087WWC5 75 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 CEACAM18A8MTB9 384 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 FCN1O00602 326 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 LSM11P83369 360 aaKnown RBP eCLIP3.71□□□□□ -1.82
VPS13C-202ENST00000261517 OR51G1Q8NGK1 321 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 MYOZ3Q8TDC0 251 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 REPIN1Q9BWE0 567 aaKnown RBP3.71□□□□□ -1.82
VPS13C-202ENST00000261517 PLCE1Q9P212 2302 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 NCOR2Q9Y618 2525 aa3.71□□□□□ -1.82
VPS13C-202ENST00000261517 MEF2BQ02080 365 aaPredicted RBP3.7□□□□□ -1.82
VPS13C-202ENST00000261517 PCNPQ8WW12 178 aaKnown RBP3.7□□□□□ -1.82
VPS13C-202ENST00000261517 STARD4Q96DR4 205 aa3.7□□□□□ -1.82
VPS13C-202ENST00000261517 MS4A10Q96PG2 267 aa3.7□□□□□ -1.82
VPS13C-202ENST00000261517 ZFP30Q9Y2G7 519 aa3.7□□□□□ -1.82
VPS13C-202ENST00000261517 A0A1B0GTH9 108 aa3.7□□□□□ -1.82
VPS13C-202ENST00000261517 CST7O76096 145 aa3.7□□□□□ -1.82
VPS13C-202ENST00000261517 EML2O95834 649 aa3.7□□□□□ -1.82
VPS13C-202ENST00000261517 COL8A1P27658 744 aa3.7□□□□□ -1.82
VPS13C-202ENST00000261517 FUT5Q11128 374 aa3.7□□□□□ -1.82
VPS13C-202ENST00000261517 MINOS1Q5TGZ0 78 aa3.7□□□□□ -1.82
VPS13C-202ENST00000261517 TCF24Q7RTU0 167 aa3.7□□□□□ -1.82
VPS13C-202ENST00000261517 GLCCI1Q86VQ1 547 aa3.7□□□□□ -1.82
VPS13C-202ENST00000261517 ZGRF1Q86YA3 2104 aa3.7□□□□□ -1.82
VPS13C-202ENST00000261517 OR4X1Q8NH49 305 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms