RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 OTX2P32243 289 aa12.14□□□□□ -0.47
SDC1-201ENST00000254351 SOX8P57073 446 aa12.14□□□□□ -0.47
SDC1-201ENST00000254351 ZNF585BQ52M93 769 aa12.14□□□□□ -0.47
SDC1-201ENST00000254351 UNQ5815/PRO19632Q6UWF5 114 aa12.14□□□□□ -0.47
SDC1-201ENST00000254351 C10orf35Q96D05 121 aa12.14□□□□□ -0.47
SDC1-201ENST00000254351 MRPL18Q9H0U6 180 aaKnown RBP12.14□□□□□ -0.47
SDC1-201ENST00000254351 ASCL3Q9NQ33 180 aa12.14□□□□□ -0.47
SDC1-201ENST00000254351 TMEM250H0YL14 139 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 M0QZK8 103 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 IL6RP08887 468 aaPredicted RBP12.13□□□□□ -0.47
SDC1-201ENST00000254351 FOXG1P55316 489 aaPredicted RBP12.13□□□□□ -0.47
SDC1-201ENST00000254351 LINC00310P59036 64 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 NUFIP2Q7Z417 695 aaKnown RBP12.13□□□□□ -0.47
SDC1-201ENST00000254351 SFRP2Q96HF1 295 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 FBXL7Q9UJT9 491 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 PRR14LQ5THK1 2151 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 SCO2A0A1W2PP80 73 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 LMO7DNF2Z398 122 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 TNFSF13O75888 250 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 WNT2P09544 360 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 CEACAM8P31997 349 aaPredicted RBP12.13□□□□□ -0.47
SDC1-201ENST00000254351 SRP14P37108 136 aaKnown RBP12.13□□□□□ -0.47
SDC1-201ENST00000254351 CEBPDP49716 269 aaPredicted RBP12.13□□□□□ -0.47
SDC1-201ENST00000254351 SPATA45Q537H7 98 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 COL5A1-AS1Q5SY13 56 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 ZNF324BQ6AW86 544 aaPredicted RBP12.13□□□□□ -0.47
SDC1-201ENST00000254351 ASCL4Q6XD76 172 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 MRPL21Q7Z2W9 205 aaKnown RBP12.13□□□□□ -0.47
SDC1-201ENST00000254351 TSTD1Q8NFU3 115 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 ELOVL5Q9NYP7 299 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 A0A0G2JMM0 328 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 A0A1W2PPB8 328 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 A0A1W2PPV4 95 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 A0A1W2PRS3 328 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 KIR3DP1A8MWS1 328 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 SNURFLB1AK76 121 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 DIRC3C9JPN6 131 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 CCL25O15444 150 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 OR5G3P0C626 314 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 COX5AP20674 150 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 CDC34P49427 236 aaPredicted RBP12.13□□□□□ -0.47
SDC1-201ENST00000254351 AGMATQ9BSE5 352 aa12.13□□□□□ -0.47
SDC1-201ENST00000254351 ZIC3O60481 467 aa12.12□□□□□ -0.47
SDC1-201ENST00000254351 KRTCAP3Q53RY4 240 aa12.12□□□□□ -0.47
SDC1-201ENST00000254351 SIGLECL1Q8N7X8 197 aa12.12□□□□□ -0.47
SDC1-201ENST00000254351 OR10P1Q8NGE3 313 aa12.12□□□□□ -0.47
SDC1-201ENST00000254351 ABHD14BQ96IU4 210 aa12.12□□□□□ -0.47
SDC1-201ENST00000254351 SLC35E1Q96K37 410 aa12.12□□□□□ -0.47
SDC1-201ENST00000254351 NPCDR1Q9BY65 106 aa12.12□□□□□ -0.47
SDC1-201ENST00000254351 PRDM6Q9NQX0 595 aa12.12□□□□□ -0.47
SDC1-201ENST00000254351 HEATR1Q9H583 2144 aaKnown RBP12.12□□□□□ -0.47
SDC1-201ENST00000254351 AMTP48728 403 aa12.12□□□□□ -0.47
SDC1-201ENST00000254351 SLC25A53Q5H9E4 307 aa12.12□□□□□ -0.47
SDC1-201ENST00000254351 TMEM42Q69YG0 159 aa12.12□□□□□ -0.47
SDC1-201ENST00000254351 OCC1Q8TAD7 63 aa12.12□□□□□ -0.47
SDC1-201ENST00000254351 TRAV24A0A0B4J272 114 aa12.11□□□□□ -0.47
SDC1-201ENST00000254351 DEFB108AA8MXU0 73 aa12.11□□□□□ -0.47
SDC1-201ENST00000254351 CBR3O75828 277 aa12.11□□□□□ -0.47
SDC1-201ENST00000254351 IGLV2-14P01704 120 aa12.11□□□□□ -0.47
SDC1-201ENST00000254351 LCN12Q6JVE5 192 aa12.11□□□□□ -0.47
SDC1-201ENST00000254351 OR5A2Q8NGI9 324 aa12.11□□□□□ -0.47
SDC1-201ENST00000254351 MAFAQ8NHW3 353 aaPredicted RBP12.11□□□□□ -0.47
SDC1-201ENST00000254351 FGF12P61328 243 aa12.11□□□□□ -0.47
SDC1-201ENST00000254351 SUMO1P63165 101 aaKnown RBP12.11□□□□□ -0.47
SDC1-201ENST00000254351 FXYD3Q14802 87 aa12.11□□□□□ -0.47
SDC1-201ENST00000254351 ALKBH2Q6NS38 261 aa12.11□□□□□ -0.47
SDC1-201ENST00000254351 SSMEM1Q8WWF3 244 aa12.11□□□□□ -0.47
SDC1-201ENST00000254351 STARD4Q96DR4 205 aa12.11□□□□□ -0.47
SDC1-201ENST00000254351 CCR5P51681 352 aa12.11□□□□□ -0.47
SDC1-201ENST00000254351 MED12LQ86YW9 2145 aa12.11□□□□□ -0.47
SDC1-201ENST00000254351 TBL2Q9Y4P3 447 aaKnown RBP12.11□□□□□ -0.47
SDC1-201ENST00000254351 CBY3A6NI87 242 aa12.1□□□□□ -0.47
SDC1-201ENST00000254351 CLDN14O95500 239 aa12.1□□□□□ -0.47
SDC1-201ENST00000254351 ARF1P84077 181 aaKnown RBP12.1□□□□□ -0.47
SDC1-201ENST00000254351 WIPI1Q5MNZ9 446 aaPredicted RBP12.1□□□□□ -0.47
SDC1-201ENST00000254351 DRAM1Q8N682 238 aa12.1□□□□□ -0.47
SDC1-201ENST00000254351 TPRX1Q8N7U7 411 aa12.1□□□□□ -0.47
SDC1-201ENST00000254351 RCHY1Q96PM5 261 aa12.1□□□□□ -0.47
SDC1-201ENST00000254351 PRRG4Q9BZD6 226 aa12.1□□□□□ -0.47
SDC1-201ENST00000254351 ICE1Q9Y2F5 2266 aa12.1□□□□□ -0.47
SDC1-201ENST00000254351 IGHV3-43A0A0B4J1X8 118 aa12.1□□□□□ -0.47
SDC1-201ENST00000254351 OR6C6A6NF89 314 aa12.1□□□□□ -0.47
SDC1-201ENST00000254351 DEGS1O15121 323 aa12.1□□□□□ -0.47
SDC1-201ENST00000254351 LINC00614P0C842 121 aa12.1□□□□□ -0.47
SDC1-201ENST00000254351 IGHV3-43DP0DP04 118 aa12.1□□□□□ -0.47
SDC1-201ENST00000254351 HNRNPA3P51991 378 aaKnown RBP12.1□□□□□ -0.47
SDC1-201ENST00000254351 OR8I2Q8N0Y5 310 aa12.1□□□□□ -0.47
SDC1-201ENST00000254351 ST6GALNAC6Q969X2 333 aa12.1□□□□□ -0.47
SDC1-201ENST00000254351 APOBEC3DQ96AK3 386 aaPredicted RBP12.1□□□□□ -0.47
SDC1-201ENST00000254351 UHRF2Q96PU4 802 aa12.1□□□□□ -0.47
SDC1-201ENST00000254351 IGHV1OR15-9A0A0B4J2B8 117 aa12.09□□□□□ -0.47
SDC1-201ENST00000254351 S1PR2O95136 353 aa12.09□□□□□ -0.47
SDC1-201ENST00000254351 NDUFB8O95169 186 aa12.09□□□□□ -0.47
SDC1-201ENST00000254351 RFPL3SP0C7P2 107 aa12.09□□□□□ -0.47
SDC1-201ENST00000254351 ARL14EPLP0DKL9 152 aa12.09□□□□□ -0.47
SDC1-201ENST00000254351 CXorf67Q86X51 503 aaPredicted RBP12.09□□□□□ -0.47
SDC1-201ENST00000254351 SAXO1Q8IYX7 474 aa12.09□□□□□ -0.47
SDC1-201ENST00000254351 SLC25A45Q8N413 288 aa12.09□□□□□ -0.47
SDC1-201ENST00000254351 APH1AQ96BI3 265 aa12.09□□□□□ -0.47
SDC1-201ENST00000254351 LRFN3Q9BTN0 628 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 114.1 ms