RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 OR8U1Q8NH10 309 aa14.23□□□□□ -0.13
CLN3-247ENST00000636351 SLIRPQ9GZT3 109 aaKnown RBP14.23□□□□□ -0.13
CLN3-247ENST00000636351 OR2D2Q9H210 308 aa14.23□□□□□ -0.13
CLN3-247ENST00000636351 MIXL1Q9H2W2 232 aa14.23□□□□□ -0.13
CLN3-247ENST00000636351 J3QRK9 145 aa14.22□□□□□ -0.13
CLN3-247ENST00000636351 OR2F2O95006 317 aa14.22□□□□□ -0.13
CLN3-247ENST00000636351 HLA-DQB1P01920 261 aa14.22□□□□□ -0.13
CLN3-247ENST00000636351 NFYAP23511 347 aaPredicted RBP14.22□□□□□ -0.13
CLN3-247ENST00000636351 LSAMPQ13449 338 aa14.22□□□□□ -0.13
CLN3-247ENST00000636351 FBLN7Q53RD9 439 aa14.22□□□□□ -0.13
CLN3-247ENST00000636351 C16orf82Q7Z2V1 217 aa14.22□□□□□ -0.13
CLN3-247ENST00000636351 SNAPC3Q92966 411 aa14.22□□□□□ -0.13
CLN3-247ENST00000636351 AGMATQ9BSE5 352 aa14.22□□□□□ -0.13
CLN3-247ENST00000636351 SCPEP1Q9HB40 452 aa14.22□□□□□ -0.13
CLN3-247ENST00000636351 NECAP2Q9NVZ3 263 aa14.22□□□□□ -0.13
CLN3-247ENST00000636351 FAM90A9PA6NNJ1 464 aa14.21□□□□□ -0.13
CLN3-247ENST00000636351 CSF1P09603 554 aa14.21□□□□□ -0.13
CLN3-247ENST00000636351 CD1BP29016 333 aa14.21□□□□□ -0.13
CLN3-247ENST00000636351 THNSL2Q86YJ6 484 aa14.21□□□□□ -0.13
CLN3-247ENST00000636351 OR2T10Q8NGZ9 312 aa14.21□□□□□ -0.13
CLN3-247ENST00000636351 DIRAS2Q96HU8 199 aa14.21□□□□□ -0.13
CLN3-247ENST00000636351 RBM14Q96PK6 669 aaKnown RBP14.21□□□□□ -0.13
CLN3-247ENST00000636351 NABP2Q9BQ15 211 aa14.21□□□□□ -0.13
CLN3-247ENST00000636351 TOLLIPQ9H0E2 274 aa14.21□□□□□ -0.13
CLN3-247ENST00000636351 GHITMQ9H3K2 345 aa14.21□□□□□ -0.13
CLN3-247ENST00000636351 RANBP3Q9H6Z4 567 aaPredicted RBP14.21□□□□□ -0.13
CLN3-247ENST00000636351 MOB4Q9Y3A3 225 aa14.21□□□□□ -0.13
CLN3-247ENST00000636351 ZNF736B4DX44 427 aaPredicted RBP14.2□□□□□ -0.14
CLN3-247ENST00000636351 M0R1X1 148 aa14.2□□□□□ -0.14
CLN3-247ENST00000636351 LUMP51884 338 aaPredicted RBP14.2□□□□□ -0.14
CLN3-247ENST00000636351 TAS2R46P59540 309 aa14.2□□□□□ -0.14
CLN3-247ENST00000636351 HABP2Q14520 560 aaPredicted RBP14.2□□□□□ -0.14
CLN3-247ENST00000636351 CDK10Q15131 360 aa14.2□□□□□ -0.14
CLN3-247ENST00000636351 OR5H2Q8NGV7 314 aa14.2□□□□□ -0.14
CLN3-247ENST00000636351 GPX8Q8TED1 209 aa14.2□□□□□ -0.14
CLN3-247ENST00000636351 C15orf40Q8WUR7 153 aa14.2□□□□□ -0.14
CLN3-247ENST00000636351 EHFQ9NZC4 300 aa14.2□□□□□ -0.14
CLN3-247ENST00000636351 NDUFA13Q9P0J0 144 aa14.2□□□□□ -0.14
CLN3-247ENST00000636351 DPPA5A6NC42 116 aa14.19□□□□□ -0.14
CLN3-247ENST00000636351 SULT1C2O00338 296 aa14.19□□□□□ -0.14
CLN3-247ENST00000636351 MOSP00540 346 aa14.19□□□□□ -0.14
CLN3-247ENST00000636351 OR5H8P0DN80 308 aa14.19□□□□□ -0.14
CLN3-247ENST00000636351 RCVRNP35243 200 aa14.19□□□□□ -0.14
CLN3-247ENST00000636351 IL18Q14116 193 aa14.19□□□□□ -0.14
CLN3-247ENST00000636351 FAM131AQ6UXB0 335 aa14.19□□□□□ -0.14
CLN3-247ENST00000636351 GLDNQ6ZMI3 551 aaPredicted RBP14.19□□□□□ -0.14
CLN3-247ENST00000636351 ZNF436-AS1Q8NC38 126 aaPredicted RBP14.19□□□□□ -0.14
CLN3-247ENST00000636351 OR5AP2Q8NGF4 316 aa14.19□□□□□ -0.14
CLN3-247ENST00000636351 OR2T6Q8NHC8 308 aa14.19□□□□□ -0.14
CLN3-247ENST00000636351 EAF1Q96JC9 268 aaPredicted RBP14.19□□□□□ -0.14
CLN3-247ENST00000636351 ZNF251Q9BRH9 671 aa14.19□□□□□ -0.14
CLN3-247ENST00000636351 PRSS22Q9GZN4 317 aa14.19□□□□□ -0.14
CLN3-247ENST00000636351 ANAPC10Q9UM13 185 aa14.19□□□□□ -0.14
CLN3-247ENST00000636351 OR2W1Q9Y3N9 320 aa14.19□□□□□ -0.14
CLN3-247ENST00000636351 NCBP2LA6PVI3 153 aaKnown RBP14.18□□□□□ -0.14
CLN3-247ENST00000636351 G3V4G9 280 aa14.18□□□□□ -0.14
CLN3-247ENST00000636351 M0QZK8 103 aa14.18□□□□□ -0.14
CLN3-247ENST00000636351 PMP2P02689 132 aa14.18□□□□□ -0.14
CLN3-247ENST00000636351 HLA-DMAP28067 261 aa14.18□□□□□ -0.14
CLN3-247ENST00000636351 FCGR2CP31995 323 aa14.18□□□□□ -0.14
CLN3-247ENST00000636351 C9orf152Q5JTZ5 239 aa14.18□□□□□ -0.14
CLN3-247ENST00000636351 HIST2H2BDQ6DRA6 164 aa14.18□□□□□ -0.14
CLN3-247ENST00000636351 DRAXINQ8NBI3 349 aaPredicted RBP14.18□□□□□ -0.14
CLN3-247ENST00000636351 RBMXL1Q96E39 390 aaKnown RBP14.18□□□□□ -0.14
CLN3-247ENST00000636351 ZNF702PQ9H963 129 aa14.18□□□□□ -0.14
CLN3-247ENST00000636351 SIGLEC9Q9Y336 463 aa14.18□□□□□ -0.14
CLN3-247ENST00000636351 OR5H14A6NHG9 310 aa14.17□□□□□ -0.14
CLN3-247ENST00000636351 H7C2Y5 167 aa14.17□□□□□ -0.14
CLN3-247ENST00000636351 TPPPO94811 219 aa14.17□□□□□ -0.14
CLN3-247ENST00000636351 APOA2P02652 100 aa14.17□□□□□ -0.14
CLN3-247ENST00000636351 CT45A6P0DMU7 189 aa14.17□□□□□ -0.14
CLN3-247ENST00000636351 CT45A5P0DMU8 189 aa14.17□□□□□ -0.14
CLN3-247ENST00000636351 CT45A7P0DMV0 189 aa14.17□□□□□ -0.14
CLN3-247ENST00000636351 AADACP22760 399 aa14.17□□□□□ -0.14
CLN3-247ENST00000636351 S100A5P33763 92 aa14.17□□□□□ -0.14
CLN3-247ENST00000636351 HRH1P35367 487 aa14.17□□□□□ -0.14
CLN3-247ENST00000636351 FXYD4P59646 89 aa14.17□□□□□ -0.14
CLN3-247ENST00000636351 HERV-K104P61576 105 aa14.17□□□□□ -0.14
CLN3-247ENST00000636351 ABCA11PQ4W5N1 156 aa14.17□□□□□ -0.14
CLN3-247ENST00000636351 OR52I2Q8NH67 350 aa14.17□□□□□ -0.14
CLN3-247ENST00000636351 SECTM1Q8WVN6 248 aa14.17□□□□□ -0.14
CLN3-247ENST00000636351 DGCR14Q96DF8 476 aaKnown RBP14.17□□□□□ -0.14
CLN3-247ENST00000636351 ABHD1Q96SE0 405 aa14.17□□□□□ -0.14
CLN3-247ENST00000636351 NXF2Q9GZY0 626 aaKnown RBP14.17□□□□□ -0.14
CLN3-247ENST00000636351 SDHAF2Q9NX18 166 aa14.17□□□□□ -0.14
CLN3-247ENST00000636351 IGKV1D-13A0A0B4J2D9 117 aa14.16□□□□□ -0.14
CLN3-247ENST00000636351 SH2D7A6NKC9 451 aaPredicted RBP14.16□□□□□ -0.14
CLN3-247ENST00000636351 TUSC2O75896 110 aa14.16□□□□□ -0.14
CLN3-247ENST00000636351 IGKV1-13P0DP09 117 aa14.16□□□□□ -0.14
CLN3-247ENST00000636351 NAT1P18440 290 aa14.16□□□□□ -0.14
CLN3-247ENST00000636351 ACTBP60709 375 aa14.16□□□□□ -0.14
CLN3-247ENST00000636351 BLCAPP62952 87 aa14.16□□□□□ -0.14
CLN3-247ENST00000636351 EBI3Q14213 229 aa14.16□□□□□ -0.14
CLN3-247ENST00000636351 MMDQ15546 238 aa14.16□□□□□ -0.14
CLN3-247ENST00000636351 BEAN1Q3B7T3 259 aa14.16□□□□□ -0.14
CLN3-247ENST00000636351 PYHIN1Q6K0P9 492 aa14.16□□□□□ -0.14
CLN3-247ENST00000636351 ZNF645Q8N7E2 425 aa14.16□□□□□ -0.14
CLN3-247ENST00000636351 C11orf44Q8N8P7 122 aa14.16□□□□□ -0.14
CLN3-247ENST00000636351 FCAMRQ8WWV6 532 aa14.16□□□□□ -0.14
CLN3-247ENST00000636351 WASHC3Q9Y3C0 194 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms