RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 CELA3AP09093 270 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 OR1C1Q15619 314 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 ALKBH6Q3KRA9 238 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 OR2J1Q9GZK6 312 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 USF3Q68DE3 2245 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 KIAA1324LA8MWY0 1029 aaPredicted RBP10.72□□□□□ -0.69
LIG1-221ENST00000613670 M0R1X1 148 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 UMODP07911 640 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 CASP6P55212 293 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 ERVFC1-1P60608 527 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 RIPPLY2Q5TAB7 128 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 ZNF826PQ6ZT77 177 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 DRAM1Q8N682 238 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 OR51G1Q8NGK1 321 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 P2RX4Q99571 388 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 TRAV34A0A0B4J273 112 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 HERPUD1Q15011 391 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 MRPL14Q6P1L8 145 aaKnown RBP10.72□□□□□ -0.69
LIG1-221ENST00000613670 CMTM2Q8TAZ6 248 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 ZDHHC16Q969W1 377 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 IL36GQ9NZH8 169 aa10.72□□□□□ -0.69
LIG1-221ENST00000613670 CADP27708 2225 aa10.71□□□□□ -0.69
LIG1-221ENST00000613670 ST8SIA5O15466 376 aa10.71□□□□□ -0.69
LIG1-221ENST00000613670 PMCHP20382 165 aa10.71□□□□□ -0.69
LIG1-221ENST00000613670 TCL1AP56279 114 aa10.71□□□□□ -0.69
LIG1-221ENST00000613670 ARL16Q0P5N6 197 aa10.71□□□□□ -0.69
LIG1-221ENST00000613670 LRRC75BQ2VPJ9 315 aa10.71□□□□□ -0.69
LIG1-221ENST00000613670 MOB1BQ7L9L4 216 aa10.71□□□□□ -0.69
LIG1-221ENST00000613670 MISP3Q96FF7 219 aa10.71□□□□□ -0.69
LIG1-221ENST00000613670 PRDM14Q9GZV8 571 aa10.71□□□□□ -0.69
LIG1-221ENST00000613670 FCN1O00602 326 aa10.71□□□□□ -0.69
LIG1-221ENST00000613670 AMBPP02760 352 aa10.71□□□□□ -0.69
LIG1-221ENST00000613670 RPL23P62829 140 aaKnown RBP10.71□□□□□ -0.69
LIG1-221ENST00000613670 TNFRSF9Q07011 255 aa10.71□□□□□ -0.69
LIG1-221ENST00000613670 FAM90A2PQ658T7 463 aa10.71□□□□□ -0.69
LIG1-221ENST00000613670 DNASE2BQ8WZ79 361 aa10.71□□□□□ -0.69
LIG1-221ENST00000613670 ANAPC16Q96DE5 110 aa10.71□□□□□ -0.69
LIG1-221ENST00000613670 IMMP1LQ96LU5 166 aa10.71□□□□□ -0.69
LIG1-221ENST00000613670 SIGLEC12Q96PQ1 595 aa10.71□□□□□ -0.69
LIG1-221ENST00000613670 FAM173AQ9BQD7 235 aa10.71□□□□□ -0.69
LIG1-221ENST00000613670 MANBALQ9NQG1 85 aa10.71□□□□□ -0.69
LIG1-221ENST00000613670 PGPEP1LA6NFU8 196 aa10.71□□□□□ -0.7
LIG1-221ENST00000613670 ZNF716A6NP11 495 aa10.71□□□□□ -0.7
LIG1-221ENST00000613670 C1QTNF9BB2RNN3 333 aa10.71□□□□□ -0.7
LIG1-221ENST00000613670 OR7C2O60412 319 aa10.71□□□□□ -0.7
LIG1-221ENST00000613670 NTF4P34130 210 aa10.71□□□□□ -0.7
LIG1-221ENST00000613670 SLC35B1P78383 322 aa10.71□□□□□ -0.7
LIG1-221ENST00000613670 CYP2G1PQ6ZSU1 146 aa10.71□□□□□ -0.7
LIG1-221ENST00000613670 SIGLECL1Q8N7X8 197 aa10.71□□□□□ -0.7
LIG1-221ENST00000613670 REPIN1Q9BWE0 567 aaKnown RBP10.71□□□□□ -0.7
LIG1-221ENST00000613670 LTBP2Q14767 1821 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 FAM90A10PA6NDY2 464 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 FAM90A18PA6NE21 464 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 FAM90A16PA6NEW6 464 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 FAM90A20PA6NIJ5 464 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 FAM90A8PA6NJQ4 464 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 FAM90A7PA6NKC0 464 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 FAM90A22PA8MWA6 464 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 FAM90A12PA8MX19 464 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 FAM90A5PA8MXJ8 464 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 FAM90A23PA8MXZ1 464 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 PPIHO43447 177 aaKnown RBP10.7□□□□□ -0.7
LIG1-221ENST00000613670 S1PR2O95136 353 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 CER1O95813 267 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 FAM90A15PP0C7V4 464 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 FAM90A13PP0C7W8 464 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 FAM90A14PP0C7W9 464 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 FAM90A24PP0C7X0 464 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 CD81P60033 236 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 TFF3Q07654 80 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 C21orf62-AS1Q17RA5 79 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 C20orf204Q6ZNR8 217 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 DEFB108BQ8NET1 73 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 SSC4DQ8WTU2 575 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 RPH3ALQ9UNE2 315 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 ZNF318Q5VUA4 2279 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 A0A1B0GW64 132 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 MDP1Q86V88 176 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 VN1R17PQ8TDU5 208 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 HAND1O96004 215 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 MT-CO3P00414 261 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 CRISP2P16562 243 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 CT55Q8WUE5 264 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 VAMP8Q9BV40 100 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 DECR2Q9NUI1 292 aa10.7□□□□□ -0.7
LIG1-221ENST00000613670 IGKV1-6A0A0C4DH72 117 aa10.69□□□□□ -0.7
LIG1-221ENST00000613670 CCKARP32238 428 aa10.69□□□□□ -0.7
LIG1-221ENST00000613670 TPPP2P59282 170 aa10.69□□□□□ -0.7
LIG1-221ENST00000613670 ATP6V1FQ16864 119 aa10.69□□□□□ -0.7
LIG1-221ENST00000613670 TDHQ8IZJ6 230 aa10.69□□□□□ -0.7
LIG1-221ENST00000613670 RPP25LQ8N5L8 163 aaKnown RBP10.69□□□□□ -0.7
LIG1-221ENST00000613670 OR10G8Q8NGN5 311 aa10.69□□□□□ -0.7
LIG1-221ENST00000613670 PPP1R35Q8TAP8 253 aa10.69□□□□□ -0.7
LIG1-221ENST00000613670 SAP25Q8TEE9 199 aa10.69□□□□□ -0.7
LIG1-221ENST00000613670 NOL4LQ96MY1 436 aaPredicted RBP10.69□□□□□ -0.7
LIG1-221ENST00000613670 PSMG3Q9BT73 122 aaPredicted RBP10.69□□□□□ -0.7
LIG1-221ENST00000613670 C1QTNF5Q9BXJ0 243 aa10.69□□□□□ -0.7
LIG1-221ENST00000613670 NAT8BQ9UHF3 227 aa10.69□□□□□ -0.7
LIG1-221ENST00000613670 CD46P15529 392 aa10.69□□□□□ -0.7
LIG1-221ENST00000613670 TAS2R60P59551 318 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms