RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 PAX9P55771 341 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 CLDN15P56746 228 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 KLF3P57682 345 aaPredicted RBP2.43□□□□□ -2.02
SLIRP-208ENST00000556956 YPEL3P61236 119 aaPredicted RBP2.43□□□□□ -2.02
SLIRP-208ENST00000556956 PPP1CAP62136 330 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 PPP1CBP62140 327 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 RPS16P62249 146 aaKnown RBP2.43□□□□□ -2.02
SLIRP-208ENST00000556956 RPS18P62269 152 aaKnown RBP2.43□□□□□ -2.02
SLIRP-208ENST00000556956 SELENOTP62341 195 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 RUNX1Q01196 453 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 MEF2BQ02080 365 aaPredicted RBP2.43□□□□□ -2.02
SLIRP-208ENST00000556956 KIR2DS1Q14954 304 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 RNPS1Q15287 305 aaKnown RBP2.43□□□□□ -2.02
SLIRP-208ENST00000556956 SHBQ15464 509 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 NSDHLQ15738 373 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 MSMO1Q15800 293 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 HIST3H3Q16695 136 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 PLPPR5Q32ZL2 321 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 COX19Q49B96 90 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 NMSQ5H8A3 153 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 TMEM31Q5JXX7 168 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 C10orf25Q5T742 122 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 CST9LP1Q5W188 147 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 LEMD1Q68G75 181 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 TEX43Q6ZNM6 134 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 FOXL2NBQ6ZUU3 175 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 TIPARPQ7Z3E1 657 aaKnown RBP2.43□□□□□ -2.02
SLIRP-208ENST00000556956 ODF3L1Q8IXM7 274 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 C20orf196Q8IYI0 205 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 METTL27Q8N6F8 245 aaPredicted RBP2.43□□□□□ -2.02
SLIRP-208ENST00000556956 ZNF525Q8N782 197 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 KLHDC1Q8N7A1 406 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 ZNF441Q8N8Z8 693 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 ZNF709Q8N972 641 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 SUMF1Q8NBK3 374 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 OR4B1Q8NGF8 309 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 OR11L1Q8NGX0 322 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 OR4F5Q8NH21 305 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 MAFAQ8NHW3 353 aaPredicted RBP2.43□□□□□ -2.02
SLIRP-208ENST00000556956 PLPPR1Q8TBJ4 325 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 MRPL30Q8TCC3 161 aaKnown RBP2.43□□□□□ -2.02
SLIRP-208ENST00000556956 TAF15Q92804 592 aaKnown RBP eCLIP2.43□□□□□ -2.02
SLIRP-208ENST00000556956 TMEM54Q969K7 222 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 GPR146Q96CH1 333 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 RPUSD4Q96CM3 377 aaKnown RBP2.43□□□□□ -2.02
SLIRP-208ENST00000556956 ZNF799Q96GE5 643 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 GMPPAQ96IJ6 420 aaPredicted RBP2.43□□□□□ -2.02
SLIRP-208ENST00000556956 THOC3Q96J01 351 aaKnown RBP2.43□□□□□ -2.02
SLIRP-208ENST00000556956 SLC35E1Q96K37 410 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 SIGLEC12Q96PQ1 595 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 OR4F4Q96R69 305 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 GABRG3Q99928 467 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 TXNDC17Q9BRA2 123 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 NUDT22Q9BRQ3 303 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 VAMP8Q9BV40 100 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 WDR61Q9GZS3 305 aaKnown RBP2.43□□□□□ -2.02
SLIRP-208ENST00000556956 WNT5BQ9H1J7 359 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 LIME1Q9H400 295 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 RIMS4Q9H426 269 aaPredicted RBP2.43□□□□□ -2.02
SLIRP-208ENST00000556956 RBKSQ9H477 322 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 NCOR1P1Q9H4R4 102 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 ZNF442Q9H7R0 627 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 ZNF665Q9H7R5 613 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 LPAR2Q9HBW0 351 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 TMEM106BQ9NUM4 274 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 SOHLH2Q9NX45 425 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 BET1LQ9NYM9 111 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 SEMA5BQ9P283 1151 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 ST3GAL6Q9Y274 331 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 ZFP30Q9Y2G7 519 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 WIPI2Q9Y4P8 454 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 RFNGQ9Y644 331 aa2.43□□□□□ -2.02
SLIRP-208ENST00000556956 NUP214P35658 2090 aaPredicted RBP2.43□□□□□ -2.02
SLIRP-208ENST00000556956 MTCL1Q9Y4B5 1905 aaKnown RBP2.42□□□□□ -2.02
SLIRP-208ENST00000556956 DOCK6Q96HP0 2047 aa2.42□□□□□ -2.02
SLIRP-208ENST00000556956 IGLV3-32A0A0A0MS00 114 aa2.42□□□□□ -2.02
SLIRP-208ENST00000556956 TRBV9A0A0B4J1U6 114 aa2.42□□□□□ -2.02
SLIRP-208ENST00000556956 TRBV11-1A0A0K0K1C0 115 aa2.42□□□□□ -2.02
SLIRP-208ENST00000556956 MDFIC2A0A1B0GVS7 189 aa2.42□□□□□ -2.02
SLIRP-208ENST00000556956 A0A1W2PN81 502 aa2.42□□□□□ -2.02
SLIRP-208ENST00000556956 LILRA5A6NI73 299 aa2.42□□□□□ -2.02
SLIRP-208ENST00000556956 SLC22A20A6NK97 555 aa2.42□□□□□ -2.02
SLIRP-208ENST00000556956 A6NNC1 897 aa2.42□□□□□ -2.02
SLIRP-208ENST00000556956 FAM166BA8MTA8 275 aa2.42□□□□□ -2.02
SLIRP-208ENST00000556956 RNF212BA8MTL3 300 aa2.42□□□□□ -2.02
SLIRP-208ENST00000556956 A8MXE2 369 aa2.42□□□□□ -2.02
SLIRP-208ENST00000556956 B4DGG1 531 aa2.42□□□□□ -2.02
SLIRP-208ENST00000556956 FAM90A26D6RGX4 464 aa2.42□□□□□ -2.02
SLIRP-208ENST00000556956 NPIPA2E9PIF3 369 aa2.42□□□□□ -2.02
SLIRP-208ENST00000556956 NPIPA3F8WFD2 350 aa2.42□□□□□ -2.02
SLIRP-208ENST00000556956 SLC33A1O00400 549 aaPredicted RBP2.42□□□□□ -2.02
SLIRP-208ENST00000556956 DEGS1O15121 323 aa2.42□□□□□ -2.02
SLIRP-208ENST00000556956 MLNRO43193 412 aa2.42□□□□□ -2.02
SLIRP-208ENST00000556956 DHHO43323 396 aa2.42□□□□□ -2.02
SLIRP-208ENST00000556956 SPRY1O43609 319 aaPredicted RBP2.42□□□□□ -2.02
SLIRP-208ENST00000556956 TRAF3IP2O43734 574 aaPredicted RBP2.42□□□□□ -2.02
SLIRP-208ENST00000556956 SYNGR2O43760 224 aa2.42□□□□□ -2.02
SLIRP-208ENST00000556956 ANGPTL7O43827 346 aa2.42□□□□□ -2.02
SLIRP-208ENST00000556956 YPEL1O60688 119 aa2.42□□□□□ -2.02
SLIRP-208ENST00000556956 CBR3O75828 277 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms