RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 C5orf52A6NGY3 159 aa9.25□□□□□ -0.93
ACTN1-216ENST00000556083 KBTBD11O94819 623 aa9.25□□□□□ -0.93
ACTN1-216ENST00000556083 TM4SF20Q53R12 229 aa9.25□□□□□ -0.93
ACTN1-216ENST00000556083 ABLIM2Q6H8Q1 611 aa9.25□□□□□ -0.93
ACTN1-216ENST00000556083 SSMEM1Q8WWF3 244 aa9.25□□□□□ -0.93
ACTN1-216ENST00000556083 ZCCHC14Q8WYQ9 949 aaKnown RBP9.25□□□□□ -0.93
ACTN1-216ENST00000556083 MSL2Q9HCI7 577 aa9.25□□□□□ -0.93
ACTN1-216ENST00000556083 METTL1Q9UBP6 276 aaKnown RBP9.25□□□□□ -0.93
ACTN1-216ENST00000556083 SOX21Q9Y651 276 aaPredicted RBP9.25□□□□□ -0.93
ACTN1-216ENST00000556083 RPL29P47914 159 aaKnown RBP9.25□□□□□ -0.93
ACTN1-216ENST00000556083 PCOLCEQ15113 449 aa9.25□□□□□ -0.93
ACTN1-216ENST00000556083 ECSCRQ19T08 205 aa9.25□□□□□ -0.93
ACTN1-216ENST00000556083 OR51G1Q8NGK1 321 aa9.25□□□□□ -0.93
ACTN1-216ENST00000556083 C16orf92Q96LL3 132 aa9.25□□□□□ -0.93
ACTN1-216ENST00000556083 DNAJC4Q9NNZ3 241 aa9.25□□□□□ -0.93
ACTN1-216ENST00000556083 SNURFLB1AK76 121 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 NPIPB11E5RHQ5 1161 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 PLA2G10O15496 165 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 ADRA2AP08913 450 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 LINC00869P0C866 280 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 SNRPD3P62318 126 aaKnown RBP9.24□□□□□ -0.93
ACTN1-216ENST00000556083 TFF2Q03403 129 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 SRSF5Q13243 272 aaKnown RBP9.24□□□□□ -0.93
ACTN1-216ENST00000556083 ITLN1Q8WWA0 313 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 PCGF1Q9BSM1 259 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 SCN1AP35498 2009 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 DLEC1Q9Y238 1755 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 PPIAL4CA0A0B4J2A2 164 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 LINC01549A6NIU2 74 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 TMEM250H0YL14 139 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 PPIAL4GP0DN37 164 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 FCARP24071 287 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 CLEC12BQ2HXU8 276 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 SMUG1Q53HV7 270 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 C12orf54Q6X4T0 127 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 SLC25A45Q8N413 288 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 SPSB4Q96A44 273 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 TNFRSF19Q9NS68 423 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 ZMAT5Q9UDW3 170 aaKnown RBP9.24□□□□□ -0.93
ACTN1-216ENST00000556083 LOC105371242A0A075B767 164 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 Q6AWC8 147 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 ZNF383Q8NA42 475 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 DLL3Q9NYJ7 618 aa9.24□□□□□ -0.93
ACTN1-216ENST00000556083 GREM1O60565 184 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 VENTXO95231 258 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 RND3P61587 244 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 ATP5G2Q06055 141 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 SLC22A18ASQ8N1D0 253 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 TMEM52Q8NDY8 209 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 TAF15Q92804 592 aaKnown RBP eCLIP9.23□□□□□ -0.93
ACTN1-216ENST00000556083 HIST1H2BAQ96A08 127 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 Q96M66 194 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 DCAF16Q9NXF7 216 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 MOB4Q9Y3A3 225 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 TAF1P21675 1872 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 TRAV9-1A0A075B6T8 112 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 HRKO00198 91 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 IGKV1D-16P01601 117 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 CD74P04233 296 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 IGKV3-11P04433 115 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 SNRPEP62304 92 aaKnown RBP9.23□□□□□ -0.93
ACTN1-216ENST00000556083 RNF151Q2KHN1 245 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 CXorf66Q5JRM2 361 aaPredicted RBP9.23□□□□□ -0.93
ACTN1-216ENST00000556083 WDR25Q64LD2 544 aaPredicted RBP9.23□□□□□ -0.93
ACTN1-216ENST00000556083 UNQ5815/PRO19632Q6UWF5 114 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 LDLRAD3Q86YD5 345 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 TMEM229AB2RXF0 380 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 HLA-DQB1P01920 261 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 FGF8P55075 233 aaPredicted RBP9.23□□□□□ -0.93
ACTN1-216ENST00000556083 UBE2V2Q15819 145 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 ZNF385CQ66K41 422 aaPredicted RBP9.23□□□□□ -0.93
ACTN1-216ENST00000556083 OR4B1Q8NGF8 309 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 GTF3AQ92664 365 aaKnown RBP9.23□□□□□ -0.93
ACTN1-216ENST00000556083 PACRGQ96M98 296 aaPredicted RBP9.23□□□□□ -0.93
ACTN1-216ENST00000556083 CCL13Q99616 98 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 PLSCR2Q9NRY7 297 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 FAM206AQ9NX38 181 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 HSPB7Q9UBY9 170 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 MYO7AQ13402 2215 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 M0R3E3 92 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 INSL4Q14641 139 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 OVCH2Q7RTZ1 564 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 MARVELD3Q96A59 401 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 GPR82Q96P67 336 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 MAP1LC3AQ9H492 121 aa9.23□□□□□ -0.93
ACTN1-216ENST00000556083 IGKV1-8A0A0C4DH67 115 aa9.22□□□□□ -0.93
ACTN1-216ENST00000556083 UBE2L6O14933 153 aa9.22□□□□□ -0.93
ACTN1-216ENST00000556083 PF4V1P10720 104 aa9.22□□□□□ -0.93
ACTN1-216ENST00000556083 PKIAP61925 76 aa9.22□□□□□ -0.93
ACTN1-216ENST00000556083 CCL8P80075 99 aa9.22□□□□□ -0.93
ACTN1-216ENST00000556083 FAM53AQ6NSI3 398 aaPredicted RBP9.22□□□□□ -0.93
ACTN1-216ENST00000556083 CACNG8Q8WXS5 425 aa9.22□□□□□ -0.93
ACTN1-216ENST00000556083 SMOC1Q9H4F8 434 aa9.22□□□□□ -0.93
ACTN1-216ENST00000556083 KLK13Q9UKR3 277 aa9.22□□□□□ -0.93
ACTN1-216ENST00000556083 ELF5Q9UKW6 265 aaPredicted RBP9.22□□□□□ -0.93
ACTN1-216ENST00000556083 KCNK7Q9Y2U2 307 aa9.22□□□□□ -0.93
ACTN1-216ENST00000556083 MRPS18BQ9Y676 258 aaKnown RBP9.22□□□□□ -0.93
ACTN1-216ENST00000556083 IGHV1-69-2A0A0G2JMI3 117 aa9.22□□□□□ -0.93
ACTN1-216ENST00000556083 IFITM10A6NMD0 228 aa9.22□□□□□ -0.93
ACTN1-216ENST00000556083 PGLYRP1O75594 196 aaPredicted RBP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms