RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 EIF4EBP1Q13541 118 aaPredicted RBP12.03□□□□□ -0.48
CLIP1-216ENST00000541410 UNQ6494/PRO21346Q6UXR6 183 aa12.03□□□□□ -0.48
CLIP1-216ENST00000541410 C1orf229Q6ZS94 237 aaPredicted RBP12.03□□□□□ -0.48
CLIP1-216ENST00000541410 OR5C1Q8NGR4 320 aa12.03□□□□□ -0.48
CLIP1-216ENST00000541410 RNASE6Q93091 150 aaKnown RBP12.03□□□□□ -0.48
CLIP1-216ENST00000541410 C14orf79Q96F83 325 aa12.03□□□□□ -0.48
CLIP1-216ENST00000541410 MS4A7Q9GZW8 240 aaPredicted RBP12.03□□□□□ -0.48
CLIP1-216ENST00000541410 TMEM231Q9H6L2 316 aa12.03□□□□□ -0.48
CLIP1-216ENST00000541410 ZNF665Q9H7R5 613 aa12.03□□□□□ -0.48
CLIP1-216ENST00000541410 NGBQ9NPG2 151 aa12.03□□□□□ -0.48
CLIP1-216ENST00000541410 ADH4P08319 380 aa12.03□□□□□ -0.48
CLIP1-216ENST00000541410 DYNLT3P51808 116 aa12.03□□□□□ -0.48
CLIP1-216ENST00000541410 HTD2P86397 168 aa12.03□□□□□ -0.48
CLIP1-216ENST00000541410 PXDC1Q5TGL8 231 aa12.03□□□□□ -0.48
CLIP1-216ENST00000541410 NCR3LG1Q68D85 454 aa12.03□□□□□ -0.48
CLIP1-216ENST00000541410 ZNF788Q6ZQV5 615 aa12.03□□□□□ -0.48
CLIP1-216ENST00000541410 SDSLQ96GA7 329 aa12.03□□□□□ -0.48
CLIP1-216ENST00000541410 ZNRD1Q9P1U0 126 aa12.03□□□□□ -0.48
CLIP1-216ENST00000541410 LPAR3Q9UBY5 353 aa12.03□□□□□ -0.48
CLIP1-216ENST00000541410 RNF212BA8MTL3 300 aa12.02□□□□□ -0.49
CLIP1-216ENST00000541410 GAPDHP04406 335 aaKnown RBP12.02□□□□□ -0.49
CLIP1-216ENST00000541410 CHRNB4P30926 498 aa12.02□□□□□ -0.49
CLIP1-216ENST00000541410 GNG10P50151 68 aa12.02□□□□□ -0.49
CLIP1-216ENST00000541410 PAX5Q02548 391 aa12.02□□□□□ -0.49
CLIP1-216ENST00000541410 MST1LQ2TV78 715 aa12.02□□□□□ -0.49
CLIP1-216ENST00000541410 SPINK9Q5DT21 86 aa12.02□□□□□ -0.49
CLIP1-216ENST00000541410 HSD17B13Q7Z5P4 300 aaPredicted RBP12.02□□□□□ -0.49
CLIP1-216ENST00000541410 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.02□□□□□ -0.49
CLIP1-216ENST00000541410 UBAC2Q8NBM4 344 aa12.02□□□□□ -0.49
CLIP1-216ENST00000541410 Q8TCH9 128 aa12.02□□□□□ -0.49
CLIP1-216ENST00000541410 KCNJ16Q9NPI9 418 aa12.02□□□□□ -0.49
CLIP1-216ENST00000541410 TMA7Q9Y2S6 64 aaKnown RBP12.02□□□□□ -0.49
CLIP1-216ENST00000541410 LYNX1G3V0Z9 82 aa12.01□□□□□ -0.49
CLIP1-216ENST00000541410 FCN3O75636 299 aa12.01□□□□□ -0.49
CLIP1-216ENST00000541410 CD3EP07766 207 aa12.01□□□□□ -0.49
CLIP1-216ENST00000541410 LYNX1P0DP58 116 aa12.01□□□□□ -0.49
CLIP1-216ENST00000541410 CATR1Q13166 79 aa12.01□□□□□ -0.49
CLIP1-216ENST00000541410 LYPD2Q6UXB3 125 aa12.01□□□□□ -0.49
CLIP1-216ENST00000541410 BPIFCQ8NFQ6 507 aa12.01□□□□□ -0.49
CLIP1-216ENST00000541410 CA5BP1Q8WTZ4 195 aa12.01□□□□□ -0.49
CLIP1-216ENST00000541410 LSM10Q969L4 123 aaKnown RBP12.01□□□□□ -0.49
CLIP1-216ENST00000541410 TOLLIPQ9H0E2 274 aa12.01□□□□□ -0.49
CLIP1-216ENST00000541410 OR6C3Q9NZP0 311 aa12.01□□□□□ -0.49
CLIP1-216ENST00000541410 PKD1L2Q7Z442 2459 aa12.01□□□□□ -0.49
CLIP1-216ENST00000541410 BORCS7-ASMTA0A0B4J1R7 106 aa12.01□□□□□ -0.49
CLIP1-216ENST00000541410 M0R1X1 148 aa12.01□□□□□ -0.49
CLIP1-216ENST00000541410 TXNL1O43396 289 aa12.01□□□□□ -0.49
CLIP1-216ENST00000541410 EIF5AP63241 154 aaKnown RBP12.01□□□□□ -0.49
CLIP1-216ENST00000541410 TRAT1Q6PIZ9 186 aa12.01□□□□□ -0.49
CLIP1-216ENST00000541410 SSX9Q7RTT3 188 aa12.01□□□□□ -0.49
CLIP1-216ENST00000541410 VKORC1L1Q8N0U8 176 aa12.01□□□□□ -0.49
CLIP1-216ENST00000541410 CISD1Q9NZ45 108 aaKnown RBP12.01□□□□□ -0.49
CLIP1-216ENST00000541410 TACC2O95359 2948 aa12.01□□□□□ -0.49
CLIP1-216ENST00000541410 COL12A1Q99715 3063 aa12.01□□□□□ -0.49
CLIP1-216ENST00000541410 HRNRQ86YZ3 2850 aaPredicted RBP12□□□□□ -0.49
CLIP1-216ENST00000541410 TRGV10A0A0A0MS01 117 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 A0A1B0GV50 99 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 LRRC30A6NM36 301 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 SYNGR2O43760 224 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 FCGR3BO75015 233 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 CGB3P0DN86 165 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 CGB7P0DN87 165 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 MUC1P15941 1255 aaPredicted RBP12□□□□□ -0.49
CLIP1-216ENST00000541410 ZP3P21754 424 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 RPS16P62249 146 aaKnown RBP12□□□□□ -0.49
CLIP1-216ENST00000541410 PRAMEF5Q5TYX0 476 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 ZBTB34Q8NCN2 500 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 MARC2Q969Z3 335 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 NDRG3Q9UGV2 375 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 JPT1Q9UK76 154 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 KBTBD11-OT1A0A1B0GTJ5 212 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 RBMXL2O75526 392 aaKnown RBP12□□□□□ -0.49
CLIP1-216ENST00000541410 WNT2P09544 360 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 METTL15P1P0C7V9 234 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 RUNX1Q01196 453 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 CR1LQ2VPA4 569 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 C1QTNF12Q5T7M4 302 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 TEX36Q5VZQ5 186 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 Q6ZRG5 221 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 EDARADDQ8WWZ3 215 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 EGLN1Q9GZT9 426 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 IFI27L2Q9H2X8 130 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 TMEM106BQ9NUM4 274 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 CLN8Q9UBY8 286 aa12□□□□□ -0.49
CLIP1-216ENST00000541410 TET2Q6N021 2002 aaPredicted RBP12□□□□□ -0.49
CLIP1-216ENST00000541410 VSTM5A8MXK1 200 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 TMEM178BH3BS89 294 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 F2RL2O00254 374 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 YPEL1O60688 119 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 CD55P08174 381 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 DUTP33316 252 aaKnown RBP11.99□□□□□ -0.49
CLIP1-216ENST00000541410 SULT1A2P50226 295 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 ZNF273Q14593 569 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 CT45A1Q5HYN5 189 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 EIF5AL1Q6IS14 154 aaKnown RBP11.99□□□□□ -0.49
CLIP1-216ENST00000541410 TMEM182Q6ZP80 229 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-216ENST00000541410 CT45A3Q8NHU0 189 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 YPEL2Q96QA6 119 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 SLC25A31Q9H0C2 315 aa11.99□□□□□ -0.49
CLIP1-216ENST00000541410 C19orf12Q9NSK7 152 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms