RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 ABLIM2Q6H8Q1 611 aa12.05□□□□□ -0.48
USP3-204ENST00000540797 LINC00114Q6XXX2 140 aa12.05□□□□□ -0.48
USP3-204ENST00000540797 NXF2Q9GZY0 626 aaKnown RBP12.05□□□□□ -0.48
USP3-204ENST00000540797 TMEM222Q9H0R3 208 aa12.05□□□□□ -0.48
USP3-204ENST00000540797 RBFOX3A6NFN3 312 aa12.05□□□□□ -0.48
USP3-204ENST00000540797 C19orf67A6NJJ6 358 aa12.05□□□□□ -0.48
USP3-204ENST00000540797 SS18L1O75177 396 aaPredicted RBP12.05□□□□□ -0.48
USP3-204ENST00000540797 HYPMO75409 117 aa12.05□□□□□ -0.48
USP3-204ENST00000540797 ZNF837Q96EG3 531 aaPredicted RBP12.05□□□□□ -0.48
USP3-204ENST00000540797 TRAPPC1Q9Y5R8 145 aa12.05□□□□□ -0.48
USP3-204ENST00000540797 GREB1Q4ZG55 1949 aa12.05□□□□□ -0.48
USP3-204ENST00000540797 CORTO00230 105 aa12.05□□□□□ -0.48
USP3-204ENST00000540797 RPL30P62888 115 aaKnown RBP12.05□□□□□ -0.48
USP3-204ENST00000540797 ANKRD55Q3KP44 614 aa12.05□□□□□ -0.48
USP3-204ENST00000540797 SLC25A38Q96DW6 304 aa12.05□□□□□ -0.48
USP3-204ENST00000540797 NAT8BQ9UHF3 227 aa12.05□□□□□ -0.48
USP3-204ENST00000540797 RIF1Q5UIP0 2472 aaKnown RBP12.04□□□□□ -0.48
USP3-204ENST00000540797 PINLYPA6NC86 204 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 E9PLN8 166 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 HSBP1O75506 76 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 CD1BP29016 333 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 VKORC1Q9BQB6 163 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 FCER1GP30273 86 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 WNT5AP41221 380 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 LCN2P80188 198 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 GUCA2BQ16661 112 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 NOL4LQ96MY1 436 aaPredicted RBP12.04□□□□□ -0.48
USP3-204ENST00000540797 UFC1Q9Y3C8 167 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 ORM1P02763 201 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 RPEL1Q2QD12 228 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 OR11H7Q8NGC8 314 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 NPVFQ9HCQ7 196 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 IGLV3-32A0A0A0MS00 114 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 CLDN34H7C241 214 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 SSBP3Q9BWW4 388 aaPredicted RBP12.04□□□□□ -0.48
USP3-204ENST00000540797 LOC102723971A0A1B0GUV8 181 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 FAM157CP0CG43 387 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 TFPI2P48307 235 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 HOXA4Q00056 320 aaPredicted RBP12.04□□□□□ -0.48
USP3-204ENST00000540797 ACP7Q6ZNF0 438 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 SLC35E3Q7Z769 313 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 LRRC75AQ8NAA5 344 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 SPRR3Q9UBC9 169 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 GPR132Q9UNW8 380 aa12.04□□□□□ -0.48
USP3-204ENST00000540797 CCDC88CQ9P219 2028 aa12.03□□□□□ -0.48
USP3-204ENST00000540797 CELA3BP08861 270 aa12.03□□□□□ -0.48
USP3-204ENST00000540797 UNQ6494/PRO21346Q6UXR6 183 aa12.03□□□□□ -0.48
USP3-204ENST00000540797 ANKRD36A6QL64 1941 aa12.03□□□□□ -0.48
USP3-204ENST00000540797 RAB5AP20339 215 aa12.03□□□□□ -0.48
USP3-204ENST00000540797 PSG7Q13046 419 aa12.03□□□□□ -0.48
USP3-204ENST00000540797 SLC35E4Q6ICL7 350 aa12.03□□□□□ -0.48
USP3-204ENST00000540797 C5orf17Q8NAS9 161 aa12.03□□□□□ -0.48
USP3-204ENST00000540797 C1QTNF5Q9BXJ0 243 aa12.03□□□□□ -0.48
USP3-204ENST00000540797 TMEM140Q9NV12 185 aa12.03□□□□□ -0.48
USP3-204ENST00000540797 ARL2-SNX15V9GYD0 113 aa12.03□□□□□ -0.48
USP3-204ENST00000540797 CHD5Q8TDI0 1954 aa12.03□□□□□ -0.48
USP3-204ENST00000540797 CXorf1O96002 111 aa12.03□□□□□ -0.48
USP3-204ENST00000540797 SSTR5P35346 364 aa12.03□□□□□ -0.48
USP3-204ENST00000540797 OVCH2Q7RTZ1 564 aa12.03□□□□□ -0.48
USP3-204ENST00000540797 FGFRL1Q8N441 504 aa12.03□□□□□ -0.48
USP3-204ENST00000540797 NHLRC2Q8NBF2 726 aa12.03□□□□□ -0.48
USP3-204ENST00000540797 POM121Q96HA1 1249 aa12.03□□□□□ -0.48
USP3-204ENST00000540797 OR10J1P30954 320 aa12.03□□□□□ -0.48
USP3-204ENST00000540797 FAM201AQ5SY85 155 aa12.03□□□□□ -0.48
USP3-204ENST00000540797 EAF1Q96JC9 268 aaPredicted RBP12.03□□□□□ -0.48
USP3-204ENST00000540797 THADAQ6YHU6 1953 aa12.02□□□□□ -0.48
USP3-204ENST00000540797 OR2A4O95047 310 aa12.02□□□□□ -0.48
USP3-204ENST00000540797 CDKN1AP38936 164 aa12.02□□□□□ -0.48
USP3-204ENST00000540797 ZNF273Q14593 569 aa12.02□□□□□ -0.48
USP3-204ENST00000540797 TMEM255AQ5JRV8 349 aa12.02□□□□□ -0.48
USP3-204ENST00000540797 OR4C13Q8NGP0 309 aa12.02□□□□□ -0.48
USP3-204ENST00000540797 LURAP1Q96LR2 239 aa12.02□□□□□ -0.48
USP3-204ENST00000540797 OR2A7Q96R45 310 aa12.02□□□□□ -0.48
USP3-204ENST00000540797 DCTN5Q9BTE1 182 aa12.02□□□□□ -0.48
USP3-204ENST00000540797 A0A1W2PS18 150 aa12.02□□□□□ -0.49
USP3-204ENST00000540797 TMEM14DPA8MWL7 114 aa12.02□□□□□ -0.49
USP3-204ENST00000540797 USF1P22415 310 aaPredicted RBP12.02□□□□□ -0.49
USP3-204ENST00000540797 ST6GAL2Q96JF0 529 aa12.02□□□□□ -0.49
USP3-204ENST00000540797 METTL26Q96S19 204 aa12.02□□□□□ -0.49
USP3-204ENST00000540797 SNRNP40Q96DI7 357 aaKnown RBP12.02□□□□□ -0.49
USP3-204ENST00000540797 VSIG10L2P0DP72 767 aa12.02□□□□□ -0.49
USP3-204ENST00000540797 CAMPP49913 170 aa12.02□□□□□ -0.49
USP3-204ENST00000540797 PPOXP50336 477 aa12.02□□□□□ -0.49
USP3-204ENST00000540797 DNM1P46Q6ZS02 220 aa12.02□□□□□ -0.49
USP3-204ENST00000540797 RBM14Q96PK6 669 aaKnown RBP12.02□□□□□ -0.49
USP3-204ENST00000540797 YTHDF2Q9Y5A9 579 aaKnown RBP12.02□□□□□ -0.49
USP3-204ENST00000540797 C17orf100A8MU93 164 aa12.01□□□□□ -0.49
USP3-204ENST00000540797 PAGE4O60829 102 aa12.01□□□□□ -0.49
USP3-204ENST00000540797 COL8A1P27658 744 aa12.01□□□□□ -0.49
USP3-204ENST00000540797 CENPVQ7Z7K6 275 aaPredicted RBP12.01□□□□□ -0.49
USP3-204ENST00000540797 TMEM18Q96B42 140 aa12.01□□□□□ -0.49
USP3-204ENST00000540797 MS4A10Q96PG2 267 aa12.01□□□□□ -0.49
USP3-204ENST00000540797 IGSF23A1L1A6 192 aa12.01□□□□□ -0.49
USP3-204ENST00000540797 ADAM11O75078 769 aa12.01□□□□□ -0.49
USP3-204ENST00000540797 RHBDL1O75783 438 aa12.01□□□□□ -0.49
USP3-204ENST00000540797 P01737 135 aa12.01□□□□□ -0.49
USP3-204ENST00000540797 KLK2P20151 261 aa12.01□□□□□ -0.49
USP3-204ENST00000540797 OR2T10Q8NGZ9 312 aa12.01□□□□□ -0.49
USP3-204ENST00000540797 GPHA2Q96T91 129 aa12.01□□□□□ -0.49
USP3-204ENST00000540797 PAXXQ9BUH6 204 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 125.8 ms