RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 MCEMP1Q8IX19 187 aa9.52□□□□□ -0.89
SYNE1-237ENST00000539504 OR5P3Q8WZ94 311 aa9.52□□□□□ -0.89
SYNE1-237ENST00000539504 MANBALQ9NQG1 85 aa9.52□□□□□ -0.89
SYNE1-237ENST00000539504 PI4KAP42356 2102 aa9.52□□□□□ -0.89
SYNE1-237ENST00000539504 LY6G6EA0A0G2JKS1 128 aa9.51□□□□□ -0.89
SYNE1-237ENST00000539504 A0A1B0GUS0 222 aa9.51□□□□□ -0.89
SYNE1-237ENST00000539504 RNF212BA8MTL3 300 aa9.51□□□□□ -0.89
SYNE1-237ENST00000539504 B4E171 279 aa9.51□□□□□ -0.89
SYNE1-237ENST00000539504 NXPH2O95156 264 aa9.51□□□□□ -0.89
SYNE1-237ENST00000539504 RAC2P15153 192 aa9.51□□□□□ -0.89
SYNE1-237ENST00000539504 TSPAN7P41732 249 aa9.51□□□□□ -0.89
SYNE1-237ENST00000539504 CYB561P49447 251 aa9.51□□□□□ -0.89
SYNE1-237ENST00000539504 TRIM61Q5EBN2 209 aa9.51□□□□□ -0.89
SYNE1-237ENST00000539504 CISD2Q8N5K1 135 aaKnown RBP9.51□□□□□ -0.89
SYNE1-237ENST00000539504 MS4A10Q96PG2 267 aa9.51□□□□□ -0.89
SYNE1-237ENST00000539504 DEPPQ9NTK1 212 aa9.51□□□□□ -0.89
SYNE1-237ENST00000539504 U3KQA8 63 aa9.51□□□□□ -0.89
SYNE1-237ENST00000539504 ZNF503-AS2A6NEH8 195 aa9.51□□□□□ -0.89
SYNE1-237ENST00000539504 RAMP3O60896 148 aa9.51□□□□□ -0.89
SYNE1-237ENST00000539504 RAB4BP61018 213 aa9.51□□□□□ -0.89
SYNE1-237ENST00000539504 ACSF3Q4G176 576 aaPredicted RBP9.51□□□□□ -0.89
SYNE1-237ENST00000539504 SPINK14Q6IE38 97 aa9.51□□□□□ -0.89
SYNE1-237ENST00000539504 SPEM1Q8N4L4 309 aa9.51□□□□□ -0.89
SYNE1-237ENST00000539504 BEND2Q8NDZ0 799 aa9.51□□□□□ -0.89
SYNE1-237ENST00000539504 ZDHHC16Q969W1 377 aa9.51□□□□□ -0.89
SYNE1-237ENST00000539504 OR2D2Q9H210 308 aa9.51□□□□□ -0.89
SYNE1-237ENST00000539504 KCNIP1Q9NZI2 227 aa9.51□□□□□ -0.89
SYNE1-237ENST00000539504 ZG16O60844 167 aa9.51□□□□□ -0.89
SYNE1-237ENST00000539504 TEX38Q6PEX7 206 aa9.51□□□□□ -0.89
SYNE1-237ENST00000539504 MRPL37Q9BZE1 423 aaKnown RBP9.51□□□□□ -0.89
SYNE1-237ENST00000539504 PATZ1Q9HBE1 687 aaKnown RBP9.51□□□□□ -0.89
SYNE1-237ENST00000539504 A0A1W2PPV4 95 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 PINLYPA6NC86 204 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 OR5B21A6NL26 309 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 FAM166BA8MTA8 275 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 M0R143 59 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 OR2H2O95918 312 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 IL18BPO95998 194 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 IL3RAP26951 378 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 CDC34P49427 236 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-237ENST00000539504 COA6Q5JTJ3 125 aaKnown RBP9.5□□□□□ -0.89
SYNE1-237ENST00000539504 ACTL10Q5JWF8 245 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 BTNL3Q6UXE8 466 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 TMEM14EPQ6UXP3 125 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 NUFIP2Q7Z417 695 aaKnown RBP9.5□□□□□ -0.89
SYNE1-237ENST00000539504 LINC00596Q86U02 117 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 DTD1Q8TEA8 209 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 SAP25Q8TEE9 199 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 APH1AQ96BI3 265 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 PGPEP1LA6NFU8 196 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 NDUFB4O95168 129 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 CYC1P08574 325 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 SRP14P37108 136 aaKnown RBP9.5□□□□□ -0.89
SYNE1-237ENST00000539504 EDDM3BP56851 147 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 TMEM256Q8N2U0 113 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 NINJ1Q92982 152 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 TMEM204Q9BSN7 226 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 SNHG12Q9BXW3 62 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 C12orf49Q9H741 205 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-237ENST00000539504 TIMM9Q9Y5J7 89 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 IGLV2-14P01704 120 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 GRPP07492 148 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 ZNF25P17030 456 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-237ENST00000539504 WNT5AP41221 380 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 OR3A1P47881 315 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 BATFQ16520 125 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 MPC1Q9Y5U8 109 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 DNAJC13O75165 2243 aa9.5□□□□□ -0.89
SYNE1-237ENST00000539504 TRAV38-1A0A0B4J264 116 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 CD33P20138 364 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 ATP6V1FQ16864 119 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 FIP1L1Q6UN15 594 aaKnown RBP9.49□□□□□ -0.89
SYNE1-237ENST00000539504 MOB1BQ7L9L4 216 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 H2BFWTQ7Z2G1 175 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 IER2Q9BTL4 223 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 PRDM6Q9NQX0 595 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 TRBV6-6A0A0A6YYG2 114 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 MDFIC2A0A1B0GVS7 189 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 ODAMA1E959 279 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 C17orf112F2Z3M2 114 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 J3QT63 122 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 GGCTO75223 188 aaKnown RBP9.49□□□□□ -0.89
SYNE1-237ENST00000539504 CELA3AP09093 270 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 ARR3P36575 388 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 CEBPDP49716 269 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-237ENST00000539504 GBGT1Q8N5D6 347 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 SGMS2Q8NHU3 365 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 NPCDR1Q9BY65 106 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 NAGKQ9UJ70 344 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 BOKQ9UMX3 212 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-237ENST00000539504 GRIFINA4D1Z8 144 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 FAM90A26D6RGX4 464 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 CDIPTO14735 213 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 S1PR2O95136 353 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 SERPINA7P05543 415 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 C1QTNF9P0C862 333 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 ATP5G3P48201 142 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 CATR1Q13166 79 aa9.49□□□□□ -0.89
SYNE1-237ENST00000539504 C3AR1Q16581 482 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms