RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 SAXO1Q8IYX7 474 aa18.9■□□□□ 0.62
TRIM28-202ENST00000341753 OR10G9Q8NGN4 311 aa18.9■□□□□ 0.62
TRIM28-202ENST00000341753 OR10G7Q8NGN6 311 aa18.9■□□□□ 0.62
TRIM28-202ENST00000341753 TMEM18Q96B42 140 aa18.9■□□□□ 0.62
TRIM28-202ENST00000341753 PCSK5Q92824 1860 aa18.9■□□□□ 0.62
TRIM28-202ENST00000341753 C19orf67A6NJJ6 358 aa18.9■□□□□ 0.62
TRIM28-202ENST00000341753 CEACAM6P40199 344 aa18.9■□□□□ 0.62
TRIM28-202ENST00000341753 TFF3Q07654 80 aa18.9■□□□□ 0.62
TRIM28-202ENST00000341753 SPINK9Q5DT21 86 aa18.9■□□□□ 0.62
TRIM28-202ENST00000341753 FAM53AQ6NSI3 398 aaPredicted RBP18.9■□□□□ 0.62
TRIM28-202ENST00000341753 DNPH1O43598 174 aa18.89■□□□□ 0.62
TRIM28-202ENST00000341753 CRYAAP02489 173 aa18.89■□□□□ 0.62
TRIM28-202ENST00000341753 FAM78BQ5VT40 261 aa18.89■□□□□ 0.62
TRIM28-202ENST00000341753 FAM58AQ8N1B3 248 aa18.89■□□□□ 0.62
TRIM28-202ENST00000341753 FGFRL1Q8N441 504 aa18.89■□□□□ 0.62
TRIM28-202ENST00000341753 DEFB123Q8N688 67 aa18.89■□□□□ 0.62
TRIM28-202ENST00000341753 OR5P3Q8WZ94 311 aa18.89■□□□□ 0.62
TRIM28-202ENST00000341753 ACY3Q96HD9 319 aa18.89■□□□□ 0.62
TRIM28-202ENST00000341753 MRPL33O75394 65 aaKnown RBP18.89■□□□□ 0.61
TRIM28-202ENST00000341753 FFAR4Q5NUL3 377 aa18.89■□□□□ 0.61
TRIM28-202ENST00000341753 KRASP01116 189 aa18.88■□□□□ 0.61
TRIM28-202ENST00000341753 GDF1P27539 372 aa18.88■□□□□ 0.61
TRIM28-202ENST00000341753 TRA2AQ13595 282 aaKnown RBP eCLIP18.88■□□□□ 0.61
TRIM28-202ENST00000341753 BEND2Q8NDZ0 799 aa18.88■□□□□ 0.61
TRIM28-202ENST00000341753 CT55Q8WUE5 264 aa18.88■□□□□ 0.61
TRIM28-202ENST00000341753 KCNE4Q8WWG9 221 aa18.88■□□□□ 0.61
TRIM28-202ENST00000341753 IER2Q9BTL4 223 aa18.88■□□□□ 0.61
TRIM28-202ENST00000341753 OR6C3Q9NZP0 311 aa18.88■□□□□ 0.61
TRIM28-202ENST00000341753 LOXL2Q9Y4K0 774 aa18.88■□□□□ 0.61
TRIM28-202ENST00000341753 DEGS1O15121 323 aa18.88■□□□□ 0.61
TRIM28-202ENST00000341753 RAMP3O60896 148 aa18.88■□□□□ 0.61
TRIM28-202ENST00000341753 PDLIM4P50479 330 aa18.88■□□□□ 0.61
TRIM28-202ENST00000341753 SPINK14Q6IE38 97 aa18.88■□□□□ 0.61
TRIM28-202ENST00000341753 TMEM256Q8N2U0 113 aa18.88■□□□□ 0.61
TRIM28-202ENST00000341753 RIMS4Q9H426 269 aaPredicted RBP18.88■□□□□ 0.61
TRIM28-202ENST00000341753 CD33P20138 364 aa18.87■□□□□ 0.61
TRIM28-202ENST00000341753 NPPCP23582 126 aa18.87■□□□□ 0.61
TRIM28-202ENST00000341753 TRAPPC2LQ9UL33 140 aa18.87■□□□□ 0.61
TRIM28-202ENST00000341753 PGPEP1LA6NFU8 196 aa18.87■□□□□ 0.61
TRIM28-202ENST00000341753 G6PCP35575 357 aa18.87■□□□□ 0.61
TRIM28-202ENST00000341753 WNT5AP41221 380 aa18.87■□□□□ 0.61
TRIM28-202ENST00000341753 TNFRSF9Q07011 255 aa18.87■□□□□ 0.61
TRIM28-202ENST00000341753 ACSF3Q4G176 576 aaPredicted RBP18.87■□□□□ 0.61
TRIM28-202ENST00000341753 SPATA46Q5T0L3 261 aa18.87■□□□□ 0.61
TRIM28-202ENST00000341753 CENPVQ7Z7K6 275 aaPredicted RBP18.87■□□□□ 0.61
TRIM28-202ENST00000341753 TMEM250H0YL14 139 aa18.87■□□□□ 0.61
TRIM28-202ENST00000341753 NUPR1O60356 82 aa18.87■□□□□ 0.61
TRIM28-202ENST00000341753 CYC1P08574 325 aa18.87■□□□□ 0.61
TRIM28-202ENST00000341753 UBE2G2P60604 165 aa18.87■□□□□ 0.61
TRIM28-202ENST00000341753 ZXDAP98168 799 aa18.87■□□□□ 0.61
TRIM28-202ENST00000341753 ZNF816Q0VGE8 651 aaPredicted RBP18.87■□□□□ 0.61
TRIM28-202ENST00000341753 DCAF12Q5T6F0 453 aa18.87■□□□□ 0.61
TRIM28-202ENST00000341753 PEAR1Q5VY43 1037 aaPredicted RBP18.87■□□□□ 0.61
TRIM28-202ENST00000341753 DRAM1Q8N682 238 aa18.87■□□□□ 0.61
TRIM28-202ENST00000341753 CTXND1A0A1B0GTU2 59 aa18.86■□□□□ 0.61
TRIM28-202ENST00000341753 CA6P23280 308 aa18.86■□□□□ 0.61
TRIM28-202ENST00000341753 TMEM14EPQ6UXP3 125 aa18.86■□□□□ 0.61
TRIM28-202ENST00000341753 OR5A2Q8NGI9 324 aa18.86■□□□□ 0.61
TRIM28-202ENST00000341753 ZDHHC16Q969W1 377 aa18.86■□□□□ 0.61
TRIM28-202ENST00000341753 LIN7CQ9NUP9 197 aaKnown RBP18.86■□□□□ 0.61
TRIM28-202ENST00000341753 IL3RAP26951 378 aa18.86■□□□□ 0.61
TRIM28-202ENST00000341753 CNN1P51911 297 aaKnown RBP18.86■□□□□ 0.61
TRIM28-202ENST00000341753 DERL1Q9BUN8 251 aa18.86■□□□□ 0.61
TRIM28-202ENST00000341753 HES7Q9BYE0 225 aa18.86■□□□□ 0.61
TRIM28-202ENST00000341753 BDP1A6H8Y1 2624 aa18.86■□□□□ 0.61
TRIM28-202ENST00000341753 GGCTO75223 188 aaKnown RBP18.85■□□□□ 0.61
TRIM28-202ENST00000341753 MPLP40238 635 aa18.85■□□□□ 0.61
TRIM28-202ENST00000341753 IQCJQ1A5X6 159 aa18.85■□□□□ 0.61
TRIM28-202ENST00000341753 VASH2Q86V25 355 aa18.85■□□□□ 0.61
TRIM28-202ENST00000341753 ZNF808Q8N4W9 903 aaPredicted RBP18.85■□□□□ 0.61
TRIM28-202ENST00000341753 GBGT1Q8N5D6 347 aa18.85■□□□□ 0.61
TRIM28-202ENST00000341753 APOBEC3DQ96AK3 386 aaPredicted RBP18.85■□□□□ 0.61
TRIM28-202ENST00000341753 FKBP11Q9NYL4 201 aa18.85■□□□□ 0.61
TRIM28-202ENST00000341753 A0A0U1RQK1 487 aa18.85■□□□□ 0.61
TRIM28-202ENST00000341753 ZNF320A2RRD8 509 aa18.85■□□□□ 0.61
TRIM28-202ENST00000341753 TUSC5Q8IXB3 177 aa18.85■□□□□ 0.61
TRIM28-202ENST00000341753 ARRDC1-AS1Q9H2J1 176 aa18.85■□□□□ 0.61
TRIM28-202ENST00000341753 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP18.84■□□□□ 0.61
TRIM28-202ENST00000341753 CST9LP1Q5W188 147 aa18.84■□□□□ 0.61
TRIM28-202ENST00000341753 TMPRSS7Q7RTY8 843 aa18.84■□□□□ 0.61
TRIM28-202ENST00000341753 OR1L1Q8NH94 360 aa18.84■□□□□ 0.61
TRIM28-202ENST00000341753 NEIL1Q96FI4 390 aaPredicted RBP18.84■□□□□ 0.61
TRIM28-202ENST00000341753 POLR3KQ9Y2Y1 108 aaPredicted RBP18.84■□□□□ 0.61
TRIM28-202ENST00000341753 C11orf94C9JXX5 98 aa18.84■□□□□ 0.61
TRIM28-202ENST00000341753 ACOT6Q3I5F7 207 aaPredicted RBP18.84■□□□□ 0.61
TRIM28-202ENST00000341753 GCSAMLQ5JQS6 135 aa18.84■□□□□ 0.61
TRIM28-202ENST00000341753 TCF23Q7RTU1 214 aa18.84■□□□□ 0.61
TRIM28-202ENST00000341753 ANAPC16Q96DE5 110 aa18.84■□□□□ 0.61
TRIM28-202ENST00000341753 TRBV6-6A0A0A6YYG2 114 aa18.83■□□□□ 0.61
TRIM28-202ENST00000341753 CELA3AP09093 270 aa18.83■□□□□ 0.61
TRIM28-202ENST00000341753 DNAJC13O75165 2243 aa18.83■□□□□ 0.61
TRIM28-202ENST00000341753 MED12LQ86YW9 2145 aa18.83■□□□□ 0.6
TRIM28-202ENST00000341753 ANKRD30BLA7E2S9 258 aa18.83■□□□□ 0.6
TRIM28-202ENST00000341753 ZG16O60844 167 aa18.83■□□□□ 0.6
TRIM28-202ENST00000341753 C6orf15Q6UXA7 325 aaPredicted RBP18.83■□□□□ 0.6
TRIM28-202ENST00000341753 CISD2Q8N5K1 135 aaKnown RBP18.83■□□□□ 0.6
TRIM28-202ENST00000341753 TRAPPC1Q9Y5R8 145 aa18.83■□□□□ 0.6
TRIM28-202ENST00000341753 C1QTNF9P0C862 333 aa18.82■□□□□ 0.6
TRIM28-202ENST00000341753 HNF1AP20823 631 aa18.82■□□□□ 0.6
TRIM28-202ENST00000341753 GCH1P30793 250 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms