RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 SIGLEC9Q9Y336 463 aa12.69□□□□□ -0.38
CCDC28A-201ENST00000332797 RNF114Q9Y508 228 aa12.69□□□□□ -0.38
CCDC28A-201ENST00000332797 MMP24Q9Y5R2 645 aa12.69□□□□□ -0.38
CCDC28A-201ENST00000332797 CT45A6P0DMU7 189 aa12.68□□□□□ -0.38
CCDC28A-201ENST00000332797 CT45A5P0DMU8 189 aa12.68□□□□□ -0.38
CCDC28A-201ENST00000332797 CT45A7P0DMV0 189 aa12.68□□□□□ -0.38
CCDC28A-201ENST00000332797 BLCAPP62952 87 aa12.68□□□□□ -0.38
CCDC28A-201ENST00000332797 EBI3Q14213 229 aa12.68□□□□□ -0.38
CCDC28A-201ENST00000332797 ARSJQ5FYB0 599 aaPredicted RBP12.68□□□□□ -0.38
CCDC28A-201ENST00000332797 GLDNQ6ZMI3 551 aaPredicted RBP12.68□□□□□ -0.38
CCDC28A-201ENST00000332797 C3orf56Q8N813 242 aa12.68□□□□□ -0.38
CCDC28A-201ENST00000332797 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.68□□□□□ -0.38
CCDC28A-201ENST00000332797 OR5AP2Q8NGF4 316 aa12.68□□□□□ -0.38
CCDC28A-201ENST00000332797 OR2T6Q8NHC8 308 aa12.68□□□□□ -0.38
CCDC28A-201ENST00000332797 DIRAS2Q96HU8 199 aa12.68□□□□□ -0.38
CCDC28A-201ENST00000332797 PRSS22Q9GZN4 317 aa12.68□□□□□ -0.38
CCDC28A-201ENST00000332797 OR2W1Q9Y3N9 320 aa12.68□□□□□ -0.38
CCDC28A-201ENST00000332797 SH2D7A6NKC9 451 aaPredicted RBP12.67□□□□□ -0.38
CCDC28A-201ENST00000332797 M0QZK8 103 aa12.67□□□□□ -0.38
CCDC28A-201ENST00000332797 M0R1X1 148 aa12.67□□□□□ -0.38
CCDC28A-201ENST00000332797 OR5H8P0DN80 308 aa12.67□□□□□ -0.38
CCDC28A-201ENST00000332797 LUMP51884 338 aaPredicted RBP12.67□□□□□ -0.38
CCDC28A-201ENST00000332797 CDK10Q15131 360 aa12.67□□□□□ -0.38
CCDC28A-201ENST00000332797 ABCA11PQ4W5N1 156 aa12.67□□□□□ -0.38
CCDC28A-201ENST00000332797 FAM131AQ6UXB0 335 aa12.67□□□□□ -0.38
CCDC28A-201ENST00000332797 Q8N6K4 173 aa12.67□□□□□ -0.38
CCDC28A-201ENST00000332797 DRAXINQ8NBI3 349 aaPredicted RBP12.67□□□□□ -0.38
CCDC28A-201ENST00000332797 C5orf30Q96GV9 206 aa12.67□□□□□ -0.38
CCDC28A-201ENST00000332797 NXF2Q9GZY0 626 aaKnown RBP12.67□□□□□ -0.38
CCDC28A-201ENST00000332797 SDHAF2Q9NX18 166 aa12.67□□□□□ -0.38
CCDC28A-201ENST00000332797 DNHD1Q96M86 4753 aa12.67□□□□□ -0.38
CCDC28A-201ENST00000332797 NCBP2LA6PVI3 153 aaKnown RBP12.66□□□□□ -0.38
CCDC28A-201ENST00000332797 HAX1O00165 279 aa12.66□□□□□ -0.38
CCDC28A-201ENST00000332797 SULT1C2O00338 296 aa12.66□□□□□ -0.38
CCDC28A-201ENST00000332797 PROP1O75360 226 aa12.66□□□□□ -0.38
CCDC28A-201ENST00000332797 NAT1P18440 290 aa12.66□□□□□ -0.38
CCDC28A-201ENST00000332797 HLA-DMAP28067 261 aa12.66□□□□□ -0.38
CCDC28A-201ENST00000332797 FCGR2CP31995 323 aa12.66□□□□□ -0.38
CCDC28A-201ENST00000332797 TAS2R46P59540 309 aa12.66□□□□□ -0.38
CCDC28A-201ENST00000332797 C9orf152Q5JTZ5 239 aa12.66□□□□□ -0.38
CCDC28A-201ENST00000332797 Q6ZS46 218 aa12.66□□□□□ -0.38
CCDC28A-201ENST00000332797 OR5H2Q8NGV7 314 aa12.66□□□□□ -0.38
CCDC28A-201ENST00000332797 C15orf40Q8WUR7 153 aa12.66□□□□□ -0.38
CCDC28A-201ENST00000332797 ABHD1Q96SE0 405 aa12.66□□□□□ -0.38
CCDC28A-201ENST00000332797 EHFQ9NZC4 300 aa12.66□□□□□ -0.38
CCDC28A-201ENST00000332797 IGKV1D-13A0A0B4J2D9 117 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 OR5H14A6NHG9 310 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 H0YJW9 148 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 H7C2Y5 167 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 TUSC2O75896 110 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 TPPPO94811 219 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 PMP2P02689 132 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 AMY1AP04745 511 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 AMY2AP04746 511 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 IGKV1-13P0DP09 117 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 AADACP22760 399 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 RCVRNP35243 200 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 LINC00205P59089 165 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 IL18Q14116 193 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 C11orf88Q6PI97 169 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 Q8N2B8 174 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 C5orf56Q8N8D9 126 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 OR52I2Q8NH67 350 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 WFDC12Q8WWY7 111 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 FGF16O43320 207 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 HRH1P35367 487 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 RFX2P48378 723 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 PROK1P58294 105 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 ACTBP60709 375 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 TMEM95Q3KNT9 176 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 ZNF645Q8N7E2 425 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 ZNF383Q8NA42 475 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 ZNF747Q9BV97 191 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 GAB2Q9UQC2 676 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 WASHC3Q9Y3C0 194 aa12.65□□□□□ -0.38
CCDC28A-201ENST00000332797 PPYP01298 95 aa12.64□□□□□ -0.39
CCDC28A-201ENST00000332797 APOA2P02652 100 aa12.64□□□□□ -0.39
CCDC28A-201ENST00000332797 TNFSF8P32971 234 aa12.64□□□□□ -0.39
CCDC28A-201ENST00000332797 MC5RP33032 325 aa12.64□□□□□ -0.39
CCDC28A-201ENST00000332797 VDAC2P45880 294 aaPredicted RBP12.64□□□□□ -0.39
CCDC28A-201ENST00000332797 F2RL1P55085 397 aa12.64□□□□□ -0.39
CCDC28A-201ENST00000332797 FXYD4P59646 89 aa12.64□□□□□ -0.39
CCDC28A-201ENST00000332797 MMDQ15546 238 aa12.64□□□□□ -0.39
CCDC28A-201ENST00000332797 FOXB2Q5VYV0 432 aa12.64□□□□□ -0.39
CCDC28A-201ENST00000332797 OVCH2Q7RTZ1 564 aa12.64□□□□□ -0.39
CCDC28A-201ENST00000332797 LYSMD2Q8IV50 215 aa12.64□□□□□ -0.39
CCDC28A-201ENST00000332797 OR8H1Q8NGG4 311 aa12.64□□□□□ -0.39
CCDC28A-201ENST00000332797 OR5AN1Q8NGI8 311 aa12.64□□□□□ -0.39
CCDC28A-201ENST00000332797 SECTM1Q8WVN6 248 aa12.64□□□□□ -0.39
CCDC28A-201ENST00000332797 FCAMRQ8WWV6 532 aa12.64□□□□□ -0.39
CCDC28A-201ENST00000332797 RITA1Q96K30 269 aa12.64□□□□□ -0.39
CCDC28A-201ENST00000332797 MMP27Q9H306 513 aa12.64□□□□□ -0.39
CCDC28A-201ENST00000332797 PLSCR3Q9NRY6 295 aa12.64□□□□□ -0.39
CCDC28A-201ENST00000332797 KLK11Q9UBX7 282 aa12.64□□□□□ -0.39
CCDC28A-201ENST00000332797 SLC22A5O76082 557 aa12.63□□□□□ -0.39
CCDC28A-201ENST00000332797 VSIG10L2P0DP72 767 aa12.63□□□□□ -0.39
CCDC28A-201ENST00000332797 CNTFRP26992 372 aa12.63□□□□□ -0.39
CCDC28A-201ENST00000332797 THBS3P49746 956 aa12.63□□□□□ -0.39
CCDC28A-201ENST00000332797 HERV-K104P61576 105 aa12.63□□□□□ -0.39
CCDC28A-201ENST00000332797 DGCR2P98153 550 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms