RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 MOB3AQ96BX8 217 aa13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 GALR2O43603 387 aaPredicted RBP13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 BCL2P10415 239 aa13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 ZNF16P17020 682 aaPredicted RBP13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 VAMP2P63027 116 aa13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 OR10G4Q8NGN3 311 aa13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 GNPNAT1Q96EK6 184 aaPredicted RBP13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 TMEM208Q9BTX3 173 aa13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 RBM7Q9Y580 266 aaKnown RBP13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 POLEQ07864 2286 aa13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 CDIPTO14735 213 aa13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 TGOLN2O43493 480 aa13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 PAX9P55771 341 aa13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 UBE2NP61088 152 aaKnown RBP13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 PNRC1Q12796 327 aaPredicted RBP13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 RTP5Q14D33 572 aa13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 TMEM211Q6ICI0 200 aa13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 ZNF695Q8IW36 515 aa13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 LOXL4Q96JB6 756 aa13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 PARD6AQ9NPB6 346 aa13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 CISD1Q9NZ45 108 aaKnown RBP13.16□□□□□ -0.3
SHROOM1-201ENST00000319854 PLCE1Q9P212 2302 aa13.15□□□□□ -0.3
SHROOM1-201ENST00000319854 HBE1P02100 147 aa13.15□□□□□ -0.3
SHROOM1-201ENST00000319854 FTH1P19P0C7X4 201 aa13.15□□□□□ -0.3
SHROOM1-201ENST00000319854 TAS2R30P59541 319 aa13.15□□□□□ -0.3
SHROOM1-201ENST00000319854 COA6Q5JTJ3 125 aaKnown RBP13.15□□□□□ -0.3
SHROOM1-201ENST00000319854 NCR3LG1Q68D85 454 aa13.15□□□□□ -0.3
SHROOM1-201ENST00000319854 PLPPR1Q8TBJ4 325 aa13.15□□□□□ -0.3
SHROOM1-201ENST00000319854 PCGF1Q9BSM1 259 aa13.15□□□□□ -0.3
SHROOM1-201ENST00000319854 TMEM222Q9H0R3 208 aa13.15□□□□□ -0.3
SHROOM1-201ENST00000319854 IL36GQ9NZH8 169 aa13.15□□□□□ -0.3
SHROOM1-201ENST00000319854 IGKV1-6A0A0C4DH72 117 aa13.15□□□□□ -0.3
SHROOM1-201ENST00000319854 M0R143 59 aa13.15□□□□□ -0.3
SHROOM1-201ENST00000319854 CDS2O95674 445 aa13.15□□□□□ -0.3
SHROOM1-201ENST00000319854 CEACAM1P13688 526 aa13.15□□□□□ -0.3
SHROOM1-201ENST00000319854 ADIRFQ15847 76 aa13.15□□□□□ -0.3
SHROOM1-201ENST00000319854 SELENOHQ8IZQ5 122 aaKnown RBP13.15□□□□□ -0.3
SHROOM1-201ENST00000319854 OR10J5Q8NHC4 309 aa13.15□□□□□ -0.3
SHROOM1-201ENST00000319854 OR5P3Q8WZ94 311 aa13.15□□□□□ -0.3
SHROOM1-201ENST00000319854 KALRNO60229 2985 aa13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 TNFSF10P50591 281 aa13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 DEFB109BQ30KR1 87 aa13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 ZNF787Q6DD87 383 aa13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 FAM58AQ8N1B3 248 aa13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 TMEM178AQ8NBL3 297 aa13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 Q9N2K0 584 aa13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 USF3Q68DE3 2245 aa13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 A0A1B0GUS0 222 aa13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 CEBPZOSA8MTT3 80 aa13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 ERVFC1-1P60608 527 aa13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 MRPL41Q8IXM3 137 aaKnown RBP13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 BCL2L2Q92843 193 aaPredicted RBP13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 VAX2Q9UIW0 290 aa13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 FUT9Q9Y231 359 aa13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 RAB4AP20338 218 aa13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 GNG3P63215 75 aa13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 ZNF826PQ6ZT77 177 aa13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 FAM185AQ8N0U4 392 aa13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 TECTBQ96PL2 329 aa13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 PYGO2Q9BRQ0 406 aa13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 OR1A1Q9P1Q5 309 aa13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 ERRFI1Q9UJM3 462 aaPredicted RBP13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 POLR3KQ9Y2Y1 108 aaPredicted RBP13.14□□□□□ -0.31
SHROOM1-201ENST00000319854 TRAV24A0A0B4J272 114 aa13.13□□□□□ -0.31
SHROOM1-201ENST00000319854 DEGS1O15121 323 aa13.13□□□□□ -0.31
SHROOM1-201ENST00000319854 TMEM267Q0VDI3 215 aaPredicted RBP13.13□□□□□ -0.31
SHROOM1-201ENST00000319854 NRN1LQ496H8 165 aa13.13□□□□□ -0.31
SHROOM1-201ENST00000319854 FAM53AQ6NSI3 398 aaPredicted RBP13.13□□□□□ -0.31
SHROOM1-201ENST00000319854 VWA1Q6PCB0 445 aa13.13□□□□□ -0.31
SHROOM1-201ENST00000319854 CCDC71LQ8N9Z2 235 aa13.13□□□□□ -0.31
SHROOM1-201ENST00000319854 OR5A2Q8NGI9 324 aa13.13□□□□□ -0.31
SHROOM1-201ENST00000319854 OR51G1Q8NGK1 321 aa13.13□□□□□ -0.31
SHROOM1-201ENST00000319854 ATP5SQ99766 215 aa13.13□□□□□ -0.31
SHROOM1-201ENST00000319854 HIPK2Q9H2X6 1198 aa13.13□□□□□ -0.31
SHROOM1-201ENST00000319854 PKDREJQ9NTG1 2253 aa13.13□□□□□ -0.31
SHROOM1-201ENST00000319854 TRAV1-1A0A0B4J248 108 aa13.13□□□□□ -0.31
SHROOM1-201ENST00000319854 IGHV1-2P23083 117 aa13.13□□□□□ -0.31
SHROOM1-201ENST00000319854 ID3Q02535 119 aa13.13□□□□□ -0.31
SHROOM1-201ENST00000319854 TBC1D28Q2M2D7 210 aa13.13□□□□□ -0.31
SHROOM1-201ENST00000319854 H1FOOQ8IZA3 346 aaPredicted RBP13.13□□□□□ -0.31
SHROOM1-201ENST00000319854 ZNF295-AS1Q8N0V1 137 aa13.13□□□□□ -0.31
SHROOM1-201ENST00000319854 GOLT1BQ9Y3E0 138 aa13.13□□□□□ -0.31
SHROOM1-201ENST00000319854 TPRP12270 2363 aaKnown RBP13.13□□□□□ -0.31
SHROOM1-201ENST00000319854 DLEU1O43261 78 aa13.12□□□□□ -0.31
SHROOM1-201ENST00000319854 CD33P20138 364 aa13.12□□□□□ -0.31
SHROOM1-201ENST00000319854 RPL29P47914 159 aaKnown RBP13.12□□□□□ -0.31
SHROOM1-201ENST00000319854 PDLIM4P50479 330 aa13.12□□□□□ -0.31
SHROOM1-201ENST00000319854 SLC25A40Q8TBP6 338 aa13.12□□□□□ -0.31
SHROOM1-201ENST00000319854 RBKSQ9H477 322 aa13.12□□□□□ -0.31
SHROOM1-201ENST00000319854 OBP2BQ9NPH6 170 aa13.12□□□□□ -0.31
SHROOM1-201ENST00000319854 PPP1R3CQ9UQK1 317 aa13.12□□□□□ -0.31
SHROOM1-201ENST00000319854 DOCK11Q5JSL3 2073 aa13.12□□□□□ -0.31
SHROOM1-201ENST00000319854 CNOT4O95628 575 aaKnown RBP13.12□□□□□ -0.31
SHROOM1-201ENST00000319854 SCGB1D1O95968 90 aa13.12□□□□□ -0.31
SHROOM1-201ENST00000319854 FABP6P51161 128 aa13.12□□□□□ -0.31
SHROOM1-201ENST00000319854 PPP1CBP62140 327 aa13.12□□□□□ -0.31
SHROOM1-201ENST00000319854 ZNF573Q86YE8 665 aa13.12□□□□□ -0.31
SHROOM1-201ENST00000319854 R3HDM4Q96D70 268 aa13.12□□□□□ -0.31
SHROOM1-201ENST00000319854 KCNS2Q9ULS6 477 aa13.12□□□□□ -0.31
SHROOM1-201ENST00000319854 A0A1W2PPQ1 181 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms