RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 MS4A3Q96HJ5 214 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 AKIRIN1Q9H9L7 192 aaPredicted RBP4.34□□□□□ -1.72
SCN1A-218ENST00000640036 CLCF1Q9UBD9 225 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 CEP192Q8TEP8 1941 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 SNRPGP15A8MWD9 76 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 BMPR1BO00238 502 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 PTHLHP12272 177 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 EGR1P18146 543 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 MPV17P39210 176 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 RPL27AP46776 148 aaKnown RBP4.34□□□□□ -1.72
SCN1A-218ENST00000640036 SLC25A1P53007 311 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 ZNF90Q03938 601 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 SRSF4Q08170 494 aaKnown RBP4.34□□□□□ -1.72
SCN1A-218ENST00000640036 FAM74A3Q4VXF1 159 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 FAM27BQ5VT28 67 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 ZNF385AQ96PM9 386 aaKnown RBP4.34□□□□□ -1.72
SCN1A-218ENST00000640036 PPIL3Q9H2H8 161 aaKnown RBP4.34□□□□□ -1.72
SCN1A-218ENST00000640036 ASCL3Q9NQ33 180 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 ZNF446Q9NWS9 450 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 PKD1L2Q7Z442 2459 aa4.34□□□□□ -1.72
SCN1A-218ENST00000640036 LYRM1O43325 122 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 BMP2P12643 396 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 FCGR2CP31995 323 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 LYZP61626 148 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 MEF2CQ06413 473 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-218ENST00000640036 KISS1Q15726 138 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 RTN4RL2Q86UN3 420 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 BEND2Q8NDZ0 799 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 OR4C16Q8NGL9 310 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 OR4A4PQ8NGN8 299 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 METTL1Q9UBP6 276 aaKnown RBP4.33□□□□□ -1.72
SCN1A-218ENST00000640036 SNURFLB1AK76 121 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 CRXO43186 299 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-218ENST00000640036 TSPAN2O60636 221 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 NTN1O95631 604 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 SLC25A5P05141 298 aaKnown RBP4.33□□□□□ -1.72
SCN1A-218ENST00000640036 MEOX2P50222 304 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 PSG6Q00889 435 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 FCN2Q15485 313 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 SIGIRRQ6IA17 410 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 MMD2Q8IY49 270 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 MRAPQ8TCY5 172 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 MYOZ3Q8TDC0 251 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 MUS81Q96NY9 551 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 CABLES2Q9BTV7 478 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 EDA2RQ9HAV5 297 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 A0A0B4J2E0 115 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 A0A1B0GV72 72 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 A0A1B0GX12 115 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 EFEMP2O95967 443 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 REG1BP48304 166 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 SLC25A53Q5H9E4 307 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 FNDC7Q5VTL7 733 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 TMEM182Q6ZP80 229 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-218ENST00000640036 RFLNBQ8N5W9 214 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 OR8B12Q8NGG6 310 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 ORAI1Q96D31 301 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 TMPRSS13Q9BYE2 586 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 OR1A1Q9P1Q5 309 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 PKIGQ9Y2B9 76 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 NSG2Q9Y328 171 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 CORTO00230 105 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 LALBAP00709 142 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 CECR9P0C854 216 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 HLA-GP17693 338 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 COL10A1Q03692 680 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 HYAL4Q2M3T9 481 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 OR13F1Q8NGS4 319 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 OTOSQ8NHW6 89 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 TMED6Q8WW62 240 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 TMEM190Q8WZ59 177 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 ERVK11-1P61568 191 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 MPV17LQ2QL34 196 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 ZNF672Q499Z4 452 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-218ENST00000640036 ABHD14AQ9BUJ0 271 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 ZNF426Q9BUY5 554 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 OR2D2Q9H210 308 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 NAT8Q9UHE5 227 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 LRP12Q9Y561 859 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 UMODP07911 640 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 CD200P41217 278 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 RIGQ13278 110 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 IGFL3Q6UXB1 125 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 LINC00596Q86U02 117 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 MARC2Q969Z3 335 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 SCMH1Q96GD3 660 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 ALKBH7Q9BT30 221 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-218ENST00000640036 LINC00470Q9BZP3 86 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 ZMAT3Q9HA38 289 aaKnown RBP4.33□□□□□ -1.72
SCN1A-218ENST00000640036 PRNDQ9UKY0 176 aa4.33□□□□□ -1.72
SCN1A-218ENST00000640036 PDCD6O75340 191 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 PEBP1P30086 187 aaKnown RBP4.32□□□□□ -1.72
SCN1A-218ENST00000640036 AKR1C3P42330 323 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 GATA4P43694 442 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 NKX2-1P43699 371 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-218ENST00000640036 RAG2P55895 527 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 SRSF9Q13242 221 aaKnown RBP eCLIP4.32□□□□□ -1.72
SCN1A-218ENST00000640036 FAM219AQ8IW50 185 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 MAP6Q96JE9 813 aa4.32□□□□□ -1.72
SCN1A-218ENST00000640036 TAF9BQ9HBM6 251 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms