RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 CDRT4Q8N9R6 151 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 OR5H2Q8NGV7 314 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 PLEKHF2Q9H8W4 249 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 GPR84Q9NQS5 396 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 C1orf123Q9NWV4 160 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 COPS7AQ9UBW8 275 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 CELSR3Q9NYQ7 3312 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 C7orf71A4D174 169 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 OR11H12B2RN74 326 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 SLC33A1O00400 549 aaPredicted RBP9.3□□□□□ -0.92
CLK3-226ENST00000569406 SNAI2O43623 268 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 ADH4P08319 380 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 ALOX5APP20292 161 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 CSRP1P21291 193 aaKnown RBP9.3□□□□□ -0.92
CLK3-226ENST00000569406 CFHR2P36980 270 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 NRN1LQ496H8 165 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 ZNF787Q6DD87 383 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 OR11H1Q8NG94 326 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 OR11H2Q8NH07 326 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 EAF1Q96JC9 268 aaPredicted RBP9.3□□□□□ -0.92
CLK3-226ENST00000569406 FER1L6-AS2Q96M78 137 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 TAAR6Q96RI8 345 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 GP6Q9HCN6 339 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 SLC22A13Q9Y226 551 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 PRR32B1ATL7 298 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 WISP1O95388 367 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 CTSEP14091 401 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 LINC00310P59036 64 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 TESK1Q15569 626 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 ADIPOQQ15848 244 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 C9orf135Q5VTT2 229 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 BRICD5Q6PL45 260 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 ZNF841Q6ZN19 808 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 C20orf196Q8IYI0 205 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 CCDC71LQ8N9Z2 235 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 OR10P1Q8NGE3 313 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 LINC00470Q9BZP3 86 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 CEP192Q8TEP8 1941 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 KIAA2026Q5HYC2 2103 aa9.3□□□□□ -0.92
CLK3-226ENST00000569406 SOX1O00570 391 aaPredicted RBP9.29□□□□□ -0.92
CLK3-226ENST00000569406 ARPC3O15145 178 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 HPNP05981 417 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 GATA2P23769 480 aaPredicted RBP9.29□□□□□ -0.92
CLK3-226ENST00000569406 CYB561P49447 251 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 TMPRSS3P57727 454 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 C1orf61Q13536 156 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 DMRTC1Q5HYR2 192 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.29□□□□□ -0.92
CLK3-226ENST00000569406 BORCS7Q96B45 105 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 TNRC6AQ8NDV7 1962 aaKnown RBP9.29□□□□□ -0.92
CLK3-226ENST00000569406 UNC13CQ8NB66 2214 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 ASXL3Q9C0F0 2248 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 DUXBA0A1W2PPF3 345 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 PLPP3O14495 311 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 CELA3BP08861 270 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 C3orf79P0CE67 100 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 CBLN1P23435 193 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 FUT6P51993 359 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 CLDN17P56750 224 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 RPL15P61313 204 aaKnown RBP9.29□□□□□ -0.92
CLK3-226ENST00000569406 PPP1CBP62140 327 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 Q56UQ5 140 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 NEGR1Q7Z3B1 354 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 PRR22Q8IZ63 422 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 SLC7A10Q9NS82 523 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 FAM24AA6NFZ4 105 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 ZNF850A8MQ14 1090 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 M0QXV9 152 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 GPX1P07203 203 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 SLC35E2P0CK97 266 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 SRP14P37108 136 aaKnown RBP9.29□□□□□ -0.92
CLK3-226ENST00000569406 PHF19Q5T6S3 580 aa9.29□□□□□ -0.92
CLK3-226ENST00000569406 OR6C6A6NF89 314 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 CD1AP06126 327 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 SERPINE2P07093 398 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 POU3F1Q03052 451 aaPredicted RBP9.28□□□□□ -0.92
CLK3-226ENST00000569406 COX19Q49B96 90 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 OR8G5Q8NG78 346 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 RAB1CQ92928 201 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 MBNL3Q9NUK0 354 aaKnown RBP9.28□□□□□ -0.92
CLK3-226ENST00000569406 RENP00797 406 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 TYMSP04818 313 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 IGLL1P15814 213 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 AADACP22760 399 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 UQCRFS1P47985 274 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 PLCXD2Q0VAA5 305 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 FNDC7Q5VTL7 733 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 CDCP2Q5VXM1 449 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 ADGRE4PQ86SQ3 457 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 LGI3Q8N145 548 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 OR5A2Q8NGI9 324 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 OR10G4Q8NGN3 311 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 OR4C3Q8NH37 302 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 NEUROG1Q92886 237 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 SLC25A44Q96H78 314 aaPredicted RBP9.28□□□□□ -0.92
CLK3-226ENST00000569406 SCGB3A2Q96PL1 93 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 CISD1Q9NZ45 108 aaKnown RBP9.28□□□□□ -0.92
CLK3-226ENST00000569406 JPT1Q9UK76 154 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 KIR2DS5A0A0G2JLQ3 304 aa9.28□□□□□ -0.92
CLK3-226ENST00000569406 A0A0G2JNG1 304 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms