RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 LRRC75BQ2VPJ9 315 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 PCOTHQ58A44 107 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 CLEC12AQ5QGZ9 265 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 TMEM42Q69YG0 159 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 TNFAIP8L2Q6P589 184 aaPredicted RBP0.82□□□□□ -2.28
VPS35-207ENST00000568191 DHRS4L2Q6PKH6 230 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 XKRXQ6PP77 449 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 RASSF6Q6ZTQ3 369 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 FAM231DQ6ZW35 169 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 TMED4Q7Z7H5 227 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 SLC51BQ86UW2 128 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 COMMD7Q86VX2 200 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 NIT1Q86X76 327 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 EIF4E3Q8N5X7 224 aaKnown RBP0.82□□□□□ -2.28
VPS35-207ENST00000568191 LINC00337Q8N6G1 96 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 OR2D3Q8NGH3 330 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 OR2K2Q8NGT1 345 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 OR11L1Q8NGX0 322 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 OR10X1Q8NGY0 326 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 OR6K3Q8NGY3 331 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 OR2V1Q8NHB1 315 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 SLC37A2Q8TED4 501 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 C16orf78Q8WTQ4 265 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 ASB17Q8WXJ9 295 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 ASB13Q8WXK3 278 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 SMIM12Q96EX1 92 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 IMP4Q96G21 291 aaKnown RBP0.82□□□□□ -2.28
VPS35-207ENST00000568191 SMARCD1Q96GM5 515 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 BIRC8Q96P09 236 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 OR2M4Q96R27 311 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 NIPSNAP1Q9BPW8 284 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 HOPXQ9BPY8 73 aaPredicted RBP0.82□□□□□ -2.28
VPS35-207ENST00000568191 FAAP24Q9BTP7 215 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 TMEM109Q9BVC6 243 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 ULBP1Q9BZM6 244 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 OR51I1Q9H343 314 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 FBXL15Q9H469 300 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 ASB7Q9H672 318 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 XPNPEP1Q9NQW7 623 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 C19orf12Q9NSK7 152 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 GID8Q9NWU2 228 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 TAS2R7Q9NYW3 318 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 GLTPQ9NZD2 209 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 DNAJC27Q9NZQ0 273 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 PRO0628Q9UI54 55 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 SBDSQ9Y3A5 250 aaKnown RBP eCLIP0.82□□□□□ -2.28
VPS35-207ENST00000568191 ORC6Q9Y5N6 252 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 ENPP4Q9Y6X5 453 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 CLUHO75153 1309 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 ZNF532Q9HCE3 1301 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 TAF1LQ8IZX4 1826 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 MYO5BQ9ULV0 1848 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 PTPRKQ15262 1439 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 NCOA1Q15788 1441 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 SCN10AQ9Y5Y9 1956 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 DSCAML1Q8TD84 2053 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 TGIF2-C20orf24A0A0A6YYL0 155 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 A0A0G2JMP0 313 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 A0A0X1KG70 313 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 A0A1B0GV72 72 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 A0A1B0GXF2 115 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 FUOMA2VDF0 154 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 FAM183AA6NL82 134 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 CLDN24A6NM45 220 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 EVPLLA8MZ36 301 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 C8orf87E5RJ46 101 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 I3L4J1 428 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 FFAR1O14842 300 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 MYL12BO14950 172 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 CHP2O43745 196 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 KLRC4O43908 158 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 PDCD6O75340 191 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 DHRS3O75911 302 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 CDS2O95674 445 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 HAND1O96004 215 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 CA2P00918 260 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 SNRPAP09012 282 aaKnown RBP0.81□□□□□ -2.28
VPS35-207ENST00000568191 CST2P09228 141 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 GABRA1P14867 456 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 SPNP16150 400 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 ZNF708P17019 499 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 AKR1C4P17516 323 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 M6PRP20645 277 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 MIPP30301 263 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 ADORA1P30542 326 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 CCR7P32248 378 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 PRSS3P35030 304 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 PSMB2P49721 201 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 TMEM33P57088 247 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 SPCS3P61009 180 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 RAB4BP61018 213 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 NAA20P61599 178 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 HBG1P69891 147 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 HBG2P69892 147 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 IFITM2Q01629 132 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 ATP5G2Q06055 141 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 LAMTOR4Q0VGL1 99 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 FOXF1Q12946 379 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 EDDM3AQ14507 147 aa0.81□□□□□ -2.28
VPS35-207ENST00000568191 POU6F1Q14863 301 aa0.81□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms