RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 ADAP1O75689 374 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 TFF1P04155 84 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 SERPINE2P07093 398 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 WNT2P09544 360 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 IGKV1-13P0DP09 117 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 F2RP25116 425 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 HOXA4Q00056 320 aaPredicted RBP7.41□□□□□ -1.22
VPS39-207ENST00000563692 MEF2CQ06413 473 aaPredicted RBP7.41□□□□□ -1.22
VPS39-207ENST00000563692 SMCO1Q147U7 214 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 IAH1Q2TAA2 248 aaPredicted RBP7.41□□□□□ -1.22
VPS39-207ENST00000563692 LRRC10Q5BKY1 277 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 GGNBP1Q5YKI7 109 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 LAMTOR1Q6IAA8 161 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 TPRX1Q8N7U7 411 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 INO80EQ8NBZ0 244 aaPredicted RBP7.41□□□□□ -1.22
VPS39-207ENST00000563692 OR52L2PQ8NGH6 319 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 GRPEL2Q8TAA5 225 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 GLYATL2Q8WU03 294 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 PPP1R1CQ8WVI7 109 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 NEU4Q8WWR8 484 aaPredicted RBP7.41□□□□□ -1.22
VPS39-207ENST00000563692 CORO2AQ92828 525 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 IL22RA2Q969J5 263 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 MSI2Q96DH6 328 aaKnown RBP7.41□□□□□ -1.22
VPS39-207ENST00000563692 TMEM56Q96MV1 263 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 GAFA1Q96PS6 74 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 YPEL2Q96QA6 119 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 SPIN2AQ99865 258 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 SPIN2BQ9BPZ2 258 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 MFFQ9GZY8 342 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 LPAR3Q9UBY5 353 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 JPT1Q9UK76 154 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 KCNS2Q9ULS6 477 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 BOLA1Q9Y3E2 137 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 TMEM56-RWDD3S4R434 201 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 PLCE1Q9P212 2302 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 ZNF469Q96JG9 3925 aaPredicted RBP7.41□□□□□ -1.22
VPS39-207ENST00000563692 ABCA2Q9BZC7 2435 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 KBTBD11-OT1A0A1B0GTJ5 212 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 ZNF729A6NN14 1252 aaPredicted RBP7.4□□□□□ -1.22
VPS39-207ENST00000563692 G3V3Q6 166 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 H0Y980 276 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 C15orf65H3BRN8 121 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 RGS13O14921 159 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 NDUFS7O75251 213 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 ATG12O94817 140 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 MPC2O95563 127 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 FSTL3O95633 263 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 CDS2O95674 445 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 RPA2P15927 270 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 NDUFB7P17568 137 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 UCP1P25874 307 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 S100A11P31949 105 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 EFNA4P52798 201 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 OPCMLQ14982 345 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 LRRC37A5PQ49AS3 106 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 TMEM268Q5VZI3 342 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 C11orf71Q6IPW1 123 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 ZNF767PQ75MW2 155 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 ZNF645Q8N7E2 425 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 TCTEX1D1Q8N7M0 179 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 MAPK1IP1LQ8NDC0 245 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 OR10A7Q8NGE5 316 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 RFESDQ8TAC1 157 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 UBALD1Q8TB05 177 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 FAM168AQ92567 244 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 RAB39BQ96DA2 213 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 TP53RKQ96S44 253 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 PLSCR3Q9NRY6 295 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 TAS2R3Q9NYW6 316 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 CALYQ9NYX4 217 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 PRR13Q9NZ81 148 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 GNG12Q9UBI6 72 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 KAAG1Q9UBP8 84 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 SLC25A10Q9UBX3 287 aaPredicted RBP7.4□□□□□ -1.22
VPS39-207ENST00000563692 CLN8Q9UBY8 286 aa7.4□□□□□ -1.22
VPS39-207ENST00000563692 TLN2Q9Y4G6 2542 aa7.4□□□□□ -1.23
VPS39-207ENST00000563692 INAFM1C9JVW0 142 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 F2RL2O00254 374 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 ITGB1BP1O14713 200 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 ADAM20O43506 726 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 TNFSF12O43508 249 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 OR2F2O95006 317 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 SLC25A16P16260 332 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 SSTR5P35346 364 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 RAB7AP51149 207 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 MRPS11P82912 194 aaKnown RBP7.39□□□□□ -1.23
VPS39-207ENST00000563692 IFITM2Q01629 132 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 CATR1Q13166 79 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 OR2F1Q13607 317 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 NDUFA5Q16718 116 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 MORN2Q502X0 79 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 THOC7Q6I9Y2 204 aaKnown RBP7.39□□□□□ -1.23
VPS39-207ENST00000563692 PRSS54Q6PEW0 395 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 ACOT7LQ6ZUV0 252 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 TMUB2Q71RG4 321 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 LYZL2Q7Z4W2 148 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 SELENOHQ8IZQ5 122 aaKnown RBP7.39□□□□□ -1.23
VPS39-207ENST00000563692 FAM216BQ8N7L0 139 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 OR8H1Q8NGG4 311 aa7.39□□□□□ -1.23
VPS39-207ENST00000563692 OR52M1Q8NGK5 317 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms