RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 OR6X1Q8NH79 312 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 SSMEM1Q8WWF3 244 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 MOB3AQ96BX8 217 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 TMEM147Q9BVK8 224 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 WIPI2Q9Y4P8 454 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 PROCRQ9UNN8 238 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 TRPM7Q96QT4 1865 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 COX5BP10606 129 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 USF1P22415 310 aaPredicted RBP12.29□□□□□ -0.44
LIMS1-215ENST00000544547 PAFAH1B2P68402 229 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 RPEL1Q2QD12 228 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 ZNF718Q3SXZ3 478 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 GPR146Q96CH1 333 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 R4GN57 208 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 IGHV1OR21-1A0A087WYE8 117 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 LDLRAD4O15165 306 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 TCF23Q7RTU1 214 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 WFDC8Q8IUA0 241 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 UCN2Q96RP3 112 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 RTN4RQ9BZR6 473 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 ATP23Q9Y6H3 246 aa12.29□□□□□ -0.44
LIMS1-215ENST00000544547 MKRN2OSH3BPM6 223 aa12.28□□□□□ -0.44
LIMS1-215ENST00000544547 M0R2Z0 102 aa12.28□□□□□ -0.44
LIMS1-215ENST00000544547 OR4A47Q6IF82 309 aa12.28□□□□□ -0.44
LIMS1-215ENST00000544547 CALHM1Q8IU99 346 aa12.28□□□□□ -0.44
LIMS1-215ENST00000544547 CARFQ8N187 725 aa12.28□□□□□ -0.44
LIMS1-215ENST00000544547 SP7Q8TDD2 431 aaPredicted RBP12.28□□□□□ -0.44
LIMS1-215ENST00000544547 SCARF2Q96GP6 870 aaPredicted RBP12.28□□□□□ -0.44
LIMS1-215ENST00000544547 FOXB1Q99853 325 aa12.28□□□□□ -0.44
LIMS1-215ENST00000544547 DEFB108AA8MXU0 73 aa12.28□□□□□ -0.44
LIMS1-215ENST00000544547 NPSP0C0P6 89 aa12.28□□□□□ -0.44
LIMS1-215ENST00000544547 SELEP16581 610 aa12.28□□□□□ -0.44
LIMS1-215ENST00000544547 DHRS13Q6UX07 377 aa12.28□□□□□ -0.44
LIMS1-215ENST00000544547 OR10S1Q8NGN2 331 aa12.28□□□□□ -0.44
LIMS1-215ENST00000544547 ZCCHC14Q8WYQ9 949 aaKnown RBP12.28□□□□□ -0.44
LIMS1-215ENST00000544547 TAF15Q92804 592 aaKnown RBP eCLIP12.28□□□□□ -0.44
LIMS1-215ENST00000544547 VWCEQ96DN2 955 aa12.28□□□□□ -0.44
LIMS1-215ENST00000544547 P2RX4Q99571 388 aa12.28□□□□□ -0.44
LIMS1-215ENST00000544547 SEMA5BQ9P283 1151 aa12.28□□□□□ -0.44
LIMS1-215ENST00000544547 UQCR10Q9UDW1 63 aa12.28□□□□□ -0.44
LIMS1-215ENST00000544547 HEATR1Q9H583 2144 aaKnown RBP12.28□□□□□ -0.44
LIMS1-215ENST00000544547 LNP1A1A4G5 178 aa12.28□□□□□ -0.44
LIMS1-215ENST00000544547 IGHV3-13P01766 116 aa12.28□□□□□ -0.44
LIMS1-215ENST00000544547 IGHV3-7P01780 117 aa12.28□□□□□ -0.44
LIMS1-215ENST00000544547 CD99P14209 185 aa12.28□□□□□ -0.44
LIMS1-215ENST00000544547 BCL3P20749 454 aa12.28□□□□□ -0.44
LIMS1-215ENST00000544547 F2RP25116 425 aa12.28□□□□□ -0.44
LIMS1-215ENST00000544547 GNG4P50150 75 aa12.28□□□□□ -0.44
LIMS1-215ENST00000544547 ZNF818PQ6ZRF7 136 aa12.28□□□□□ -0.44
LIMS1-215ENST00000544547 MRPL18Q9H0U6 180 aaKnown RBP12.28□□□□□ -0.44
LIMS1-215ENST00000544547 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.28□□□□□ -0.44
LIMS1-215ENST00000544547 SLC22A20A6NK97 555 aa12.27□□□□□ -0.44
LIMS1-215ENST00000544547 MARCH11A6NNE9 402 aa12.27□□□□□ -0.44
LIMS1-215ENST00000544547 BRS3P32247 399 aa12.27□□□□□ -0.44
LIMS1-215ENST00000544547 GPR12P47775 334 aa12.27□□□□□ -0.44
LIMS1-215ENST00000544547 PLAURQ03405 335 aa12.27□□□□□ -0.44
LIMS1-215ENST00000544547 CADM4Q8NFZ8 388 aa12.27□□□□□ -0.44
LIMS1-215ENST00000544547 ZNF385AQ96PM9 386 aaKnown RBP12.27□□□□□ -0.44
LIMS1-215ENST00000544547 IGHV4-34P06331 123 aa12.27□□□□□ -0.45
LIMS1-215ENST00000544547 TMEM211Q6ICI0 200 aa12.27□□□□□ -0.45
LIMS1-215ENST00000544547 GTF2H5Q6ZYL4 71 aa12.27□□□□□ -0.45
LIMS1-215ENST00000544547 Q96M66 194 aa12.27□□□□□ -0.45
LIMS1-215ENST00000544547 ZNF319Q9P2F9 582 aa12.27□□□□□ -0.45
LIMS1-215ENST00000544547 SRP14P37108 136 aaKnown RBP12.27□□□□□ -0.45
LIMS1-215ENST00000544547 MMDQ15546 238 aa12.27□□□□□ -0.45
LIMS1-215ENST00000544547 ASPHD2Q6ICH7 369 aa12.27□□□□□ -0.45
LIMS1-215ENST00000544547 OR4B1Q8NGF8 309 aa12.27□□□□□ -0.45
LIMS1-215ENST00000544547 ZNF721Q8TF20 911 aa12.27□□□□□ -0.45
LIMS1-215ENST00000544547 A0A1W2PQD3 144 aa12.27□□□□□ -0.45
LIMS1-215ENST00000544547 CD55P08174 381 aa12.27□□□□□ -0.45
LIMS1-215ENST00000544547 CA6P23280 308 aa12.27□□□□□ -0.45
LIMS1-215ENST00000544547 OTX1P32242 354 aaPredicted RBP12.27□□□□□ -0.45
LIMS1-215ENST00000544547 DSCR4P56555 118 aaPredicted RBP12.27□□□□□ -0.45
LIMS1-215ENST00000544547 PRDX4Q13162 271 aa12.27□□□□□ -0.45
LIMS1-215ENST00000544547 RAB35Q15286 201 aa12.27□□□□□ -0.45
LIMS1-215ENST00000544547 ZNF488Q96MN9 340 aa12.27□□□□□ -0.45
LIMS1-215ENST00000544547 S1PR3Q99500 378 aa12.27□□□□□ -0.45
LIMS1-215ENST00000544547 WDR87Q6ZQQ6 2873 aa12.27□□□□□ -0.45
LIMS1-215ENST00000544547 ANAPC1Q9H1A4 1944 aa12.26□□□□□ -0.45
LIMS1-215ENST00000544547 CACNA1HO95180 2353 aa12.26□□□□□ -0.45
LIMS1-215ENST00000544547 TRAV38-1A0A0B4J264 116 aa12.26□□□□□ -0.45
LIMS1-215ENST00000544547 G6PCP35575 357 aa12.26□□□□□ -0.45
LIMS1-215ENST00000544547 MNX1P50219 401 aaPredicted RBP12.26□□□□□ -0.45
LIMS1-215ENST00000544547 RPL24P83731 157 aaKnown RBP12.26□□□□□ -0.45
LIMS1-215ENST00000544547 SNAI3Q3KNW1 292 aa12.26□□□□□ -0.45
LIMS1-215ENST00000544547 OR8I2Q8N0Y5 310 aa12.26□□□□□ -0.45
LIMS1-215ENST00000544547 ARL6IP6Q8N6S5 226 aa12.26□□□□□ -0.45
LIMS1-215ENST00000544547 BEND2Q8NDZ0 799 aa12.26□□□□□ -0.45
LIMS1-215ENST00000544547 VSIRQ9H7M9 311 aa12.26□□□□□ -0.45
LIMS1-215ENST00000544547 TECRQ9NZ01 308 aaKnown RBP12.26□□□□□ -0.45
LIMS1-215ENST00000544547 MPZP25189 248 aa12.26□□□□□ -0.45
LIMS1-215ENST00000544547 TCTAP57738 103 aa12.26□□□□□ -0.45
LIMS1-215ENST00000544547 RPL23P62829 140 aaKnown RBP12.26□□□□□ -0.45
LIMS1-215ENST00000544547 TMEM256Q8N2U0 113 aa12.26□□□□□ -0.45
LIMS1-215ENST00000544547 TIMD4Q96H15 378 aa12.26□□□□□ -0.45
LIMS1-215ENST00000544547 SPOCK3Q9BQ16 436 aa12.26□□□□□ -0.45
LIMS1-215ENST00000544547 PCED1AQ9H1Q7 454 aa12.26□□□□□ -0.45
LIMS1-215ENST00000544547 NOTCH4Q99466 2003 aa12.26□□□□□ -0.45
LIMS1-215ENST00000544547 IGKV1-9A0A0C4DH69 117 aa12.26□□□□□ -0.45
LIMS1-215ENST00000544547 C5orf67F2Z3F1 127 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms