RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 KBTBD11-OT1A0A1B0GTJ5 212 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 WI2-2373I1.2A0A1W2PRP0 233 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 DISC1C4P0D8 188 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 C12orf77C9JDV5 145 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 RNASEK-C17orf49H0YIS7 233 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 SDCBPO00560 298 aaPredicted RBP10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 BET1O15155 118 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 LANCL1O43813 399 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 FCN3O75636 299 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 RAB3DO95716 219 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 SCTP09683 121 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 NFYBP25208 207 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 HRH1P35367 487 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 DEFA1P59665 94 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 DEFA3P59666 94 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 MEF2DQ14814 521 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 HMGN3Q15651 99 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 METTL11BQ5VVY1 283 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 STEAP1BQ6NZ63 245 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 Q6ZS49 121 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 TMEM17Q86X19 198 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 LYG1Q8N1E2 194 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 WFDC9Q8NEX5 89 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 OR1L1Q8NH94 360 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 OR10J5Q8NHC4 309 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 TRIM63Q969Q1 353 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 SDHCQ99643 169 aaPredicted RBP10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 IDI2-AS1Q9NZ38 188 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 ZNRD1Q9P1U0 126 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 GNG12Q9UBI6 72 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 SLC23A1Q9UHI7 598 aa10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 ZNF107Q9UII5 783 aaPredicted RBP10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 RBMX2Q9Y388 322 aaKnown RBP10.08□□□□□ -0.8
CLSTN3-208ENST00000538933 IGKV1D-8A0A087WSZ0 117 aa10.07□□□□□ -0.8
CLSTN3-208ENST00000538933 ANKRD20A5PA0PJZ0 165 aa10.07□□□□□ -0.8
CLSTN3-208ENST00000538933 ADARB2-AS1A8MUL3 147 aa10.07□□□□□ -0.8
CLSTN3-208ENST00000538933 M0QYG6 137 aa10.07□□□□□ -0.8
CLSTN3-208ENST00000538933 RGS11O94810 467 aa10.07□□□□□ -0.8
CLSTN3-208ENST00000538933 CD3DP04234 171 aa10.07□□□□□ -0.8
CLSTN3-208ENST00000538933 AMY2AP04746 511 aa10.07□□□□□ -0.8
CLSTN3-208ENST00000538933 NAT1P18440 290 aa10.07□□□□□ -0.8
CLSTN3-208ENST00000538933 TBPP20226 339 aa10.07□□□□□ -0.8
CLSTN3-208ENST00000538933 ARF6P62330 175 aa10.07□□□□□ -0.8
CLSTN3-208ENST00000538933 TMEM30BQ3MIR4 351 aa10.07□□□□□ -0.8
CLSTN3-208ENST00000538933 PRAMEF5Q5TYX0 476 aa10.07□□□□□ -0.8
CLSTN3-208ENST00000538933 STEAP3Q658P3 488 aa10.07□□□□□ -0.8
CLSTN3-208ENST00000538933 ZNF782Q6ZMW2 699 aaPredicted RBP10.07□□□□□ -0.8
CLSTN3-208ENST00000538933 C1orf122Q6ZSJ8 110 aa10.07□□□□□ -0.8
CLSTN3-208ENST00000538933 SNAPC3Q92966 411 aa10.07□□□□□ -0.8
CLSTN3-208ENST00000538933 OR2S2Q9NQN1 319 aa10.07□□□□□ -0.8
CLSTN3-208ENST00000538933 ANAPC10Q9UM13 185 aa10.07□□□□□ -0.8
CLSTN3-208ENST00000538933 RBM7Q9Y580 266 aaKnown RBP10.07□□□□□ -0.8
CLSTN3-208ENST00000538933 IGHV3-43A0A0B4J1X8 118 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 M0R1W7 72 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 DIRAS3O95661 229 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 IGHV3-43DP0DP04 118 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 ZBTB25P24278 435 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 KRTAP10-11P60412 298 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 ERVFRD-1P60508 538 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 HERV-K104P61576 105 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 DCTN2Q13561 401 aaKnown RBP10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 C17orf58Q2M2W7 97 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 SCGB2B2Q4G0G5 96 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 IGSF11Q5DX21 431 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 DEFB121Q5J5C9 76 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 MZT2BQ6NZ67 158 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 TCF23Q7RTU1 214 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 PDZD9Q8IXQ8 264 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 KLHDC1Q8N7A1 406 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 LY6G5BQ8NDX9 201 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 OR10A7Q8NGE5 316 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 OR10V1Q8NGI7 309 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 DEDD2Q8WXF8 326 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 DMRTB1Q96MA1 342 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 B9D2Q9BPU9 175 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 C7orf50Q9BRJ6 194 aaKnown RBP10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 JPT1Q9UK76 154 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 HYDINQ4G0P3 5121 aa10.06□□□□□ -0.8
CLSTN3-208ENST00000538933 FAM172BPA6NC97 362 aa10.05□□□□□ -0.8
CLSTN3-208ENST00000538933 NAP1L6A6NFF2 107 aa10.05□□□□□ -0.8
CLSTN3-208ENST00000538933 C15orf65H3BRN8 121 aa10.05□□□□□ -0.8
CLSTN3-208ENST00000538933 OR5H8P0DN80 308 aa10.05□□□□□ -0.8
CLSTN3-208ENST00000538933 IGLL1P15814 213 aa10.05□□□□□ -0.8
CLSTN3-208ENST00000538933 CEACAM6P40199 344 aa10.05□□□□□ -0.8
CLSTN3-208ENST00000538933 RFX2P48378 723 aa10.05□□□□□ -0.8
CLSTN3-208ENST00000538933 DYRK1AQ13627 763 aa10.05□□□□□ -0.8
CLSTN3-208ENST00000538933 KLF9Q13886 244 aaPredicted RBP10.05□□□□□ -0.8
CLSTN3-208ENST00000538933 NSUN5P1Q3KNT7 163 aa10.05□□□□□ -0.8
CLSTN3-208ENST00000538933 FAAP20Q6NZ36 180 aa10.05□□□□□ -0.8
CLSTN3-208ENST00000538933 C11orf88Q6PI97 169 aa10.05□□□□□ -0.8
CLSTN3-208ENST00000538933 HEPN1Q6WQI6 88 aa10.05□□□□□ -0.8
CLSTN3-208ENST00000538933 C5orf24Q7Z6I8 188 aa10.05□□□□□ -0.8
CLSTN3-208ENST00000538933 LYSMD2Q8IV50 215 aa10.05□□□□□ -0.8
CLSTN3-208ENST00000538933 POC5Q8NA72 575 aa10.05□□□□□ -0.8
CLSTN3-208ENST00000538933 OR52L2PQ8NGH6 319 aa10.05□□□□□ -0.8
CLSTN3-208ENST00000538933 OR4C16Q8NGL9 310 aa10.05□□□□□ -0.8
CLSTN3-208ENST00000538933 OR6F1Q8NGZ6 308 aa10.05□□□□□ -0.8
CLSTN3-208ENST00000538933 CABLES2Q9BTV7 478 aa10.05□□□□□ -0.8
CLSTN3-208ENST00000538933 TINAGL1Q9GZM7 467 aaPredicted RBP10.05□□□□□ -0.8
CLSTN3-208ENST00000538933 PALMDQ9NP74 551 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms