RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 RBMY1DP0C7P1 496 aaKnown RBP3.57□□□□□ -1.84
CD44-220ENST00000525688 RBMY1A1P0DJD3 496 aaKnown RBP3.57□□□□□ -1.84
CD44-220ENST00000525688 IGKV1-13P0DP09 117 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 TDGF1P13385 188 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 OGNP20774 298 aaKnown RBP3.57□□□□□ -1.84
CD44-220ENST00000525688 GABRR1P24046 479 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 MEOX2P50222 304 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 RAP1BP61224 184 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 PRDX1Q06830 199 aaKnown RBP3.57□□□□□ -1.84
CD44-220ENST00000525688 ZNF266Q14584 549 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 SURF2Q15527 256 aaPredicted RBP3.57□□□□□ -1.84
CD44-220ENST00000525688 ZNF630Q2M218 657 aaPredicted RBP3.57□□□□□ -1.84
CD44-220ENST00000525688 SMIM21Q3B7S5 101 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 ACOT6Q3I5F7 207 aaPredicted RBP3.57□□□□□ -1.84
CD44-220ENST00000525688 MIA3Q5JRA6 1907 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 TMEM78Q5T7P6 136 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 TEX36Q5VZQ5 186 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 GPR179Q6PRD1 2367 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 SPNS3Q6ZMD2 512 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 Q6ZS52 159 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 GVINP1Q7Z2Y8 2422 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 PEX26Q7Z412 305 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 ANGPTL5Q86XS5 388 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 DEFB106AQ8N104 65 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 SLC22A18ASQ8N1D0 253 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 POM121L12Q8N7R1 296 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 CHST4Q8NCG5 386 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 OR4P4Q8NGL7 312 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 MCFD2Q8NI22 146 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 GRPEL2Q8TAA5 225 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 ZFP90Q8TF47 636 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 CYGBQ8WWM9 190 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 SRSF12Q8WXF0 261 aaKnown RBP3.57□□□□□ -1.84
CD44-220ENST00000525688 CHCHD10Q8WYQ3 142 aaPredicted RBP3.57□□□□□ -1.84
CD44-220ENST00000525688 RNF126Q9BV68 326 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 RIOK2Q9BVS4 552 aaKnown RBP3.57□□□□□ -1.84
CD44-220ENST00000525688 MS4A8Q9BY19 250 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 C20orf85Q9H1P6 137 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 ABCG5Q9H222 651 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 TPT1P8Q9HAU6 139 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 LRTM1Q9HBL6 345 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 DEC1Q9P2X7 70 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 VSIG4Q9Y279 399 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 UTP11Q9Y3A2 253 aaKnown RBP3.57□□□□□ -1.84
CD44-220ENST00000525688 V9GY05 133 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 EP300Q09472 2414 aaPredicted RBP3.56□□□□□ -1.84
CD44-220ENST00000525688 PHF3Q92576 2039 aaKnown RBP3.56□□□□□ -1.84
CD44-220ENST00000525688 IGLV1-36A0A0B4J1U3 117 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 A0A0B4J2A0 478 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 A0A0G2JRQ6 117 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 PQLC2LA1A4F0 135 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 FAM220BPB1ANY3 271 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 HCRTR1O43613 425 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 NPIPB7O75200 414 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 REM1O75628 298 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 SULT1C4O75897 302 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 MMP7P09237 267 aaPredicted RBP3.56□□□□□ -1.84
CD44-220ENST00000525688 OR5G3P0C626 314 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 CISD3P0C7P0 127 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 GKN3PP0CG01 181 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 SULT1A3P0DMM9 295 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 SULT1A4P0DMN0 295 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 CT45A10P0DMU9 189 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 CD79AP11912 226 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 FOLR2P14207 255 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 GABRA1P14867 456 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 ZNF708P17019 499 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 TCN2P20062 427 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 MYL9P24844 172 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 S100PP25815 95 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 MIPP30301 263 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 AKR1C3P42330 323 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 CXCL12P48061 93 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 ZNF133P52736 654 aaPredicted RBP3.56□□□□□ -1.84
CD44-220ENST00000525688 RIPPLY3P57055 190 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 RHOBP62745 196 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 SLC35A2P78381 396 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 EMX1Q04741 257 aaPredicted RBP3.56□□□□□ -1.84
CD44-220ENST00000525688 TMEM128Q5BJH2 165 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 TTC32Q5I0X7 151 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 CLEC12AQ5QGZ9 265 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 AVPI1Q5T686 147 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 N4BP2L1Q5TBK1 243 aaPredicted RBP3.56□□□□□ -1.84
CD44-220ENST00000525688 ELP2Q6IA86 826 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 OPN5Q6U736 354 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 TOMM20LQ6UXN7 152 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 C4orf22Q6V702 233 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 SLC16A13Q7RTY0 426 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 ZNF571Q7Z3V5 609 aaPredicted RBP3.56□□□□□ -1.84
CD44-220ENST00000525688 C9orf40Q8IXQ3 194 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 C6orf223Q8N319 242 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 RXFP2Q8WXD0 754 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 C1orf147Q96MC9 270 aaPredicted RBP3.56□□□□□ -1.84
CD44-220ENST00000525688 ATOH8Q96SQ7 321 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 MARVELD1Q9BSK0 173 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 MROQ9BYG7 248 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 OR51E2Q9H255 320 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 ISG20L2Q9H9L3 353 aaKnown RBP3.56□□□□□ -1.84
CD44-220ENST00000525688 RASL12Q9NYN1 266 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 SHPKQ9UHJ6 478 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms