RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 FAM90A27PA6NNH2 459 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 COX7A2P2O60397 106 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 IGLV3-19P01714 112 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 ZNF708P17019 499 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 SULT1A2P50226 295 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 ADAMTS17Q8TE56 1095 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 ABHD14AQ9BUJ0 271 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 TMEM222Q9H0R3 208 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 PPP1R14DQ9NXH3 145 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 FOXJ2Q9P0K8 574 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 IL36RNQ9UBH0 155 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 NLRC5Q86WI3 1866 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 IGKV1-9A0A0C4DH69 117 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 CRYM-AS1A6NIL9 109 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 OR2H2O95918 312 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 HRASP01112 189 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 HNRNPA3P51991 378 aaKnown RBP10.07□□□□□ -0.8
SYNPO-204ENST00000519664 TCL1AP56279 114 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 FAM78BQ5VT40 261 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 MS4A10Q96PG2 267 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 HSD17B10Q99714 261 aaKnown RBP10.07□□□□□ -0.8
SYNPO-204ENST00000519664 FAM157AC9JC47 383 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 CRYABP02511 175 aaKnown RBP10.06□□□□□ -0.8
SYNPO-204ENST00000519664 MMP7P09237 267 aaPredicted RBP10.06□□□□□ -0.8
SYNPO-204ENST00000519664 UCP2P55851 309 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 KRTDAPP60985 99 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 ASPHD2Q6ICH7 369 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 OR10S1Q8NGN2 331 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 OR1L1Q8NH94 360 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 TP53RKQ96S44 253 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 RARRES2Q99969 163 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 GNB4Q9HAV0 340 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 HES4Q9HCC6 221 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 DLL3Q9NYJ7 618 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 LNP1A1A4G5 178 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 CHRNB4P30926 498 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 PAQR4Q8N4S7 273 aaPredicted RBP10.06□□□□□ -0.8
SYNPO-204ENST00000519664 OR4A4PQ8NGN8 299 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 SLC25A28Q96A46 364 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 MISP3Q96FF7 219 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 TMEM147Q9BVK8 224 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 OPN3Q9H1Y3 402 aaPredicted RBP10.06□□□□□ -0.8
SYNPO-204ENST00000519664 H0YL77 283 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 TPPP2P59282 170 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 SLC23A3Q6PIS1 610 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 RTN4RL2Q86UN3 420 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 BLNKQ8WV28 456 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 TRAV14DV4A0A0A6YYC5 116 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 OOEPA6NGQ2 149 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 IGHMP01871 453 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 HLA-GP17693 338 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 TMEM108Q6UXF1 575 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 ZNF818PQ6ZRF7 136 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 BHLHA15Q7RTS1 189 aaPredicted RBP10.06□□□□□ -0.8
SYNPO-204ENST00000519664 MRPL13Q9BYD1 178 aaKnown RBP10.06□□□□□ -0.8
SYNPO-204ENST00000519664 REG4Q9BYZ8 158 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 Q9N2K0 584 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 TRAPPC1Q9Y5R8 145 aa10.06□□□□□ -0.8
SYNPO-204ENST00000519664 TMEM265A0A087WTH1 108 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 RNF222A6NCQ9 220 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 UBE2CO00762 179 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 PLAURQ03405 335 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 IGFBP7Q16270 282 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 LRRC10Q5BKY1 277 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 STPG1Q5TH74 334 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 DHRS11Q6UWP2 260 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 SIGLECL1Q8N7X8 197 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 LEAP2Q969E1 77 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 MOB3AQ96BX8 217 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 CHRNA10Q9GZZ6 450 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 LOC390937A0A1W2PQ73 354 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 C11orf94C9JXX5 98 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 WISP1O95388 367 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 ORM2P19652 201 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 COL10A1Q03692 680 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 RIPPLY2Q5TAB7 128 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 FAM214BQ7L5A3 538 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 SLC35D1Q9NTN3 355 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 ANAPC1Q9H1A4 1944 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 C5orf63A6NC05 138 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 PGLYRP1O75594 196 aaPredicted RBP10.05□□□□□ -0.8
SYNPO-204ENST00000519664 RHBDL1O75783 438 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 CLDN14O95500 239 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 HBZP02008 142 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 UMODP07911 640 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 GAMTQ14353 236 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 TIMD4Q96H15 378 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 DDA1Q9BW61 102 aa10.05□□□□□ -0.8
SYNPO-204ENST00000519664 IGFBP3P17936 291 aaPredicted RBP10.04□□□□□ -0.8
SYNPO-204ENST00000519664 LY6G6FQ5SQ64 297 aa10.04□□□□□ -0.8
SYNPO-204ENST00000519664 GPR146Q96CH1 333 aa10.04□□□□□ -0.8
SYNPO-204ENST00000519664 NEIL1Q96FI4 390 aaPredicted RBP10.04□□□□□ -0.8
SYNPO-204ENST00000519664 AQP10Q96PS8 301 aa10.04□□□□□ -0.8
SYNPO-204ENST00000519664 TIMP4Q99727 224 aa10.04□□□□□ -0.8
SYNPO-204ENST00000519664 GPR61Q9BZJ8 451 aa10.04□□□□□ -0.8
SYNPO-204ENST00000519664 SLC2A8Q9NY64 477 aa10.04□□□□□ -0.8
SYNPO-204ENST00000519664 THSD7BQ9C0I4 1608 aa10.04□□□□□ -0.8
SYNPO-204ENST00000519664 A0A1B0GU03 582 aa10.04□□□□□ -0.8
SYNPO-204ENST00000519664 DBX1A6NMT0 343 aa10.04□□□□□ -0.8
SYNPO-204ENST00000519664 KIAA1324LA8MWY0 1029 aaPredicted RBP10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms