RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-210	ENST00000485247	RIDA	P52758	137 aa	Known RBP	3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	LIPE	Q05469	1076 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	SF3A3	Q12874	501 aa	Known RBP eCLIP	3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	PDZK1IP1	Q13113	114 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	CDK5R1	Q15078	307 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	TNFAIP8L3	Q5GJ75	292 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	C10orf25	Q5T742	122 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	BCL2L15	Q5TBC7	163 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	PXDC1	Q5TGL8	231 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	RSBN1	Q5VWQ0	802 aa	Predicted RBP	3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	PVRIG	Q6DKI7	326 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	ZNF343	Q6P1L6	599 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	DEGS2	Q6QHC5	323 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247		Q6ZR54	194 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	ELMOD2	Q8IZ81	293 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	TMEM61	Q8N0U2	210 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	C8orf31	Q8N9H6	132 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	POC5	Q8NA72	575 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	NPB	Q8NG41	125 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	OR2T33	Q8NG76	320 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	OR9Q2	Q8NGE9	314 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	OR5D18	Q8NGL1	313 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	PLPPR1	Q8TBJ4	325 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	SNAPC3	Q92966	411 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	ARL11	Q969Q4	196 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	C7orf26	Q96N11	449 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	NR1H4	Q96RI1	486 aa	Predicted RBP	3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	NCOR1P1	Q9H4R4	102 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	CMC2	Q9NRP2	79 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	CMTM6	Q9NX76	183 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	NKIRAS1	Q9NYS0	192 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	TECR	Q9NZ01	308 aa	Known RBP	3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	MGAT4C	Q9UBM8	478 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	UBQLN2	Q9UHD9	624 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	OR52A1	Q9UKL2	312 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	IKZF2	Q9UKS7	526 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	BAIAP2	Q9UQB8	552 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247		V9GYQ6	96 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	DNAH6	Q9C0G6	4158 aa		3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	SRRM2	Q9UQ35	2752 aa	Known RBP	3.88	□□□□□ -1.79
PTPN4-210	ENST00000485247	FLG2	Q5D862	2391 aa	Predicted RBP	3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	TRAV24	A0A0B4J272	114 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	IGKV1-9	A0A0C4DH69	117 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	KIR2DL5B	A0A0G2JN68	375 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	KIR2DL5B	A0A0G2JPC4	375 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	C2orf70	A6NJV1	201 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	C15orf65	H3BRN8	121 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	LGALS9	O00182	355 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	BMPR1B	O00238	502 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	RRH	O14718	337 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	MAGEB4	O15481	346 aa	Predicted RBP	3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	SYT7	O43581	403 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	ZNF254	O75437	659 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	SRSF10	O75494	262 aa	Known RBP	3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	KDM4B	O94953	1096 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	NPPA	P01160	153 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	IFNA10	P01566	189 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	MRPL3	P09001	348 aa	Known RBP	3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	RRM2	P31350	389 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	ZNF137P	P52743	207 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	ANKRD55	Q3KP44	614 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	CT45A1	Q5HYN5	189 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	ZNF57	Q68EA5	555 aa	Predicted RBP	3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247		Q6ZSR3	168 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	RASSF6	Q6ZTQ3	369 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	NR2C2AP	Q86WQ0	139 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	ZNF679	Q8IYX0	411 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	KIR2DL5A	Q8N109	375 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	IQCF1	Q8N6M8	205 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	OR10V1	Q8NGI7	309 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	OR52M1	Q8NGK5	317 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	OR11H2	Q8NH07	326 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	KIR2DL5B	Q8NHK3	375 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	CT45A3	Q8NHU0	189 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	GRPEL2	Q8TAA5	225 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	CCDC107	Q8WV48	283 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	CACNG8	Q8WXS5	425 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	BTBD10	Q9BSF8	475 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	MRPL20	Q9BYC9	149 aa	Known RBP	3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	CHST5	Q9GZS9	411 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	C11orf68	Q9H3H3	251 aa	Known RBP	3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	NEK6	Q9HC98	313 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	SPAG4	Q9NPE6	437 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	GID8	Q9NWU2	228 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	GNG12	Q9UBI6	72 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	STEAP1	Q9UHE8	339 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	LRP1B	Q9NZR2	4599 aa		3.87	□□□□□ -1.79
PTPN4-210	ENST00000485247	TRAV10	A0A0B4J240	114 aa		3.86	□□□□□ -1.79
PTPN4-210	ENST00000485247		H3BUA1	57 aa		3.86	□□□□□ -1.79
PTPN4-210	ENST00000485247	LANCL1	O43813	399 aa		3.86	□□□□□ -1.79
PTPN4-210	ENST00000485247	RPP14	O95059	124 aa	Known RBP	3.86	□□□□□ -1.79
PTPN4-210	ENST00000485247	CA2	P00918	260 aa		3.86	□□□□□ -1.79
PTPN4-210	ENST00000485247	TMEM225B	P0DP42	221 aa		3.86	□□□□□ -1.79
PTPN4-210	ENST00000485247	GZMH	P20718	246 aa		3.86	□□□□□ -1.79
PTPN4-210	ENST00000485247	CCL1	P22362	96 aa		3.86	□□□□□ -1.79
PTPN4-210	ENST00000485247	AADAC	P22760	399 aa		3.86	□□□□□ -1.79
PTPN4-210	ENST00000485247	CBLN1	P23435	193 aa		3.86	□□□□□ -1.79
PTPN4-210	ENST00000485247	MAGEA2	P43356	314 aa		3.86	□□□□□ -1.79
PTPN4-210	ENST00000485247	VSNL1	P62760	191 aa		3.86	□□□□□ -1.79
PTPN4-210	ENST00000485247	C4orf46	Q504U0	113 aa		3.86	□□□□□ -1.79

Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms