RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ZNF429Q86V71 674 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 CDC20BQ86Y33 519 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 OR10G7Q8NGN6 311 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 C8orf46Q8TAG6 207 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 VOPP1Q96AW1 172 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 Q96MF0 132 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 CHIAQ9BZP6 476 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 RNASE7Q9H1E1 156 aaKnown RBP4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 IKZF5Q9H5V7 419 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 PRORYQ9H606 182 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 SLC25A19Q9HC21 320 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 HRASLS2Q9NWW9 162 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 FKBP11Q9NYL4 201 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 IL36GQ9NZH8 169 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 CACFD1Q9UGQ2 172 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 HIGD1AQ9Y241 93 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 RCL1Q9Y2P8 373 aaKnown RBP4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 MRPS16Q9Y3D3 137 aaKnown RBP4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 PLXND1Q9Y4D7 1925 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 TCRBV5S1A1TA0A578 114 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 ODAMA1E959 279 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 MLNRO43193 412 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 ZIC3O60481 467 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 KBTBD11O94819 623 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 TOXO94900 526 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 NHLRC4P0CG21 123 aaPredicted RBP4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 FAM157CP0CG43 387 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 BLVRBP30043 206 aaPredicted RBP4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 CCR2P41597 374 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 CDKN2AP42771 156 aaKnown RBP4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 SGSHP51688 502 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 PDX1P52945 283 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 CLDN6P56747 220 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 RPL31P62899 125 aaKnown RBP4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 CDK3Q00526 305 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 GUSBP1Q15486 140 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 TMEM183BQ1AE95 376 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 DMRTC1Q5HYR2 192 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 UNQ6126/PRO20091Q6UXV3 157 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 TEX43Q6ZNM6 134 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 TMEM150AQ86TG1 271 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 OR4N5Q8IXE1 308 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 ADAD2Q8NCV1 583 aaKnown RBP4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 MFSD8Q8NHS3 518 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 FRZBQ92765 325 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 FAM173AQ9BQD7 235 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 SLC25A39Q9BZJ4 359 aaPredicted RBP4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 OR2D2Q9H210 308 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 PELI2Q9HAT8 420 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 C1orf123Q9NWV4 160 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 DNAJC27Q9NZQ0 273 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 PKIGQ9Y2B9 76 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 TMED7Q9Y3B3 224 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 COL4A2P08572 1712 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 PTPRDP23468 1912 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 CNOT1A5YKK6 2376 aaKnown RBP4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 KIF26AQ9ULI4 1882 aaPredicted RBP4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 NSG1A0A0A6YYJ2 146 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 LOC107984640A0A0U1RRK4 108 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 DHRS12A0PJE2 317 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 ZNF850A8MQ14 1090 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 EFNA2O43921 213 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 CLDN11O75508 207 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 REG1AP05451 166 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 TRGC1P0CF51 173 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 FAM106CPP0CH98 169 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 ZNF728P0DKX0 622 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 CD58P19256 250 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 PRKACGP22612 351 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 OR1D4P47884 311 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 SEC61A1P61619 476 aaKnown RBP4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 MLF2Q15773 248 aaPredicted RBP4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 HIST3H3Q16695 136 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 FAM106AQ4KMX7 169 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 ZNF684Q5T5D7 378 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 FAM166AQ6J272 317 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 UFSP1Q6NVU6 142 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 CD164L2Q6UWJ8 174 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 MOB1BQ7L9L4 216 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 GLCCI1Q86VQ1 547 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 GATD1Q8NB37 220 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 ZNF675Q8TD23 568 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 OR5P3Q8WZ94 311 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 TMEM18Q96B42 140 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 SDSLQ96GA7 329 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 UBE2TQ9NPD8 197 aaPredicted RBP4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 CYSLTR1Q9Y271 337 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 NUP205Q92621 2012 aa4.02□□□□□ -1.77
CCDC88A-209ENST00000456975 ANKRD11Q6UB99 2663 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 SETXQ7Z333 2677 aaKnown RBP4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 TCRBV3S1A0A5B6 114 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 FAM181BA6NEQ2 426 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 TMEM235A6NFC5 223 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 TMEM202A6NGA9 273 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 K7EPK0 472 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 GAPDHSO14556 408 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 TAAR5O14804 337 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 LDB3O75112 727 aa4.01□□□□□ -1.77
CCDC88A-209ENST00000456975 C1QL1O75973 258 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms