RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 LAMTOR1Q6IAA8 161 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 NPVFQ9HCQ7 196 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 TMEM218A2RU14 115 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 NPIPB6E9PJ23 425 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 CDS2O95674 445 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 MEOX2P50222 304 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 FAM27BQ5VT28 67 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 GCSAMQ8N6F7 178 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 ZNF645Q8N7E2 425 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 C7orf77A4D0Y5 90 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 LEUTXA8MZ59 168 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 SLC25A17O43808 307 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 HOXD4P09016 255 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-206ENST00000429895 MFAP2P55001 183 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 NANOS3P60323 173 aaKnown RBP13.31□□□□□ -0.28
PTPRF-206ENST00000429895 ELOVL1Q9BW60 279 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 HSPB7Q9UBY9 170 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 IL19Q9UHD0 177 aa13.31□□□□□ -0.28
PTPRF-206ENST00000429895 ZNF25P17030 456 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-206ENST00000429895 COX19Q49B96 90 aa13.3□□□□□ -0.28
PTPRF-206ENST00000429895 MARS2Q96GW9 593 aaKnown RBP13.3□□□□□ -0.28
PTPRF-206ENST00000429895 ATG101Q9BSB4 218 aa13.3□□□□□ -0.28
PTPRF-206ENST00000429895 OR2A4O95047 310 aa13.3□□□□□ -0.28
PTPRF-206ENST00000429895 SP9P0CG40 484 aa13.3□□□□□ -0.28
PTPRF-206ENST00000429895 ATP5G2Q06055 141 aa13.3□□□□□ -0.28
PTPRF-206ENST00000429895 FAM74A3Q4VXF1 159 aa13.3□□□□□ -0.28
PTPRF-206ENST00000429895 OR2A7Q96R45 310 aa13.3□□□□□ -0.28
PTPRF-206ENST00000429895 B4DEV8 164 aa13.3□□□□□ -0.28
PTPRF-206ENST00000429895 WDR25Q64LD2 544 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-206ENST00000429895 OR52M1Q8NGK5 317 aa13.3□□□□□ -0.28
PTPRF-206ENST00000429895 LINC01560Q8TB33 94 aa13.3□□□□□ -0.28
PTPRF-206ENST00000429895 ZFP30Q9Y2G7 519 aa13.3□□□□□ -0.28
PTPRF-206ENST00000429895 H3BTX0 84 aa13.3□□□□□ -0.28
PTPRF-206ENST00000429895 ACAA1P09110 424 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-206ENST00000429895 SCGB1A1P11684 91 aa13.3□□□□□ -0.28
PTPRF-206ENST00000429895 MC5RP33032 325 aa13.3□□□□□ -0.28
PTPRF-206ENST00000429895 COMPP49747 757 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-206ENST00000429895 RBKSQ9H477 322 aa13.3□□□□□ -0.28
PTPRF-206ENST00000429895 IDI2-AS1Q9NZ38 188 aa13.3□□□□□ -0.28
PTPRF-206ENST00000429895 UQCRFS1P47985 274 aa13.3□□□□□ -0.28
PTPRF-206ENST00000429895 RPL8P62917 257 aaKnown RBP13.3□□□□□ -0.28
PTPRF-206ENST00000429895 ST6GALNAC2Q9UJ37 374 aa13.3□□□□□ -0.28
PTPRF-206ENST00000429895 RNF115Q9Y4L5 304 aa13.3□□□□□ -0.28
PTPRF-206ENST00000429895 STAG3L2P0CL84 134 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 FGF12P61328 243 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 CD300CQ08708 224 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 PRSS27Q9BQR3 290 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 DDA1Q9BW61 102 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 PAPPAQ13219 1627 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 LOC105371242A0A075B767 164 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 A0A1W2PP11 408 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 DLL1O00548 723 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 ZIC3O60481 467 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 FAM106AQ4KMX7 169 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 BRWD1Q9NSI6 2320 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 MMP16P51512 607 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 GPHA2Q96T91 129 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 SCN3AQ9NY46 2000 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 PGPA6NDG6 321 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 TMEM262E9PQX1 116 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 GCGP01275 180 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 C1QCP02747 245 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 CKS2P33552 79 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 FAM74A4Q5TZK3 123 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 PGLYRP4Q96LB8 373 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 PHLDA3Q9Y5J5 127 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 A0A087X0M5 115 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 A0A1B0GX30 115 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 KBTBD11O94819 623 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 NUDT3O95989 172 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 RND2P52198 227 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 SLC25A45Q8N413 288 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 TP53RKQ96S44 253 aa13.29□□□□□ -0.28
PTPRF-206ENST00000429895 IGHV3-35A0A0C4DH35 117 aa13.28□□□□□ -0.28
PTPRF-206ENST00000429895 PRDM6Q9NQX0 595 aa13.28□□□□□ -0.28
PTPRF-206ENST00000429895 CX3CL1P78423 397 aa13.28□□□□□ -0.28
PTPRF-206ENST00000429895 ZP4Q12836 540 aa13.28□□□□□ -0.28
PTPRF-206ENST00000429895 TMEM91Q6ZNR0 172 aa13.28□□□□□ -0.28
PTPRF-206ENST00000429895 OPN4Q9UHM6 478 aa13.28□□□□□ -0.28
PTPRF-206ENST00000429895 CA2P00918 260 aa13.28□□□□□ -0.28
PTPRF-206ENST00000429895 SNAI3Q3KNW1 292 aa13.28□□□□□ -0.28
PTPRF-206ENST00000429895 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.28□□□□□ -0.28
PTPRF-206ENST00000429895 ZNF343Q6P1L6 599 aa13.28□□□□□ -0.28
PTPRF-206ENST00000429895 ABHD12Q8N2K0 398 aa13.28□□□□□ -0.28
PTPRF-206ENST00000429895 CALYQ9NYX4 217 aa13.28□□□□□ -0.28
PTPRF-206ENST00000429895 LMX1BO60663 402 aa13.28□□□□□ -0.28
PTPRF-206ENST00000429895 NDUFB4O95168 129 aa13.28□□□□□ -0.28
PTPRF-206ENST00000429895 PDLIM4P50479 330 aa13.28□□□□□ -0.28
PTPRF-206ENST00000429895 PCSK4Q6UW60 755 aa13.28□□□□□ -0.28
PTPRF-206ENST00000429895 PTPRZ1P23471 2315 aaPredicted RBP13.28□□□□□ -0.28
PTPRF-206ENST00000429895 ZNF383Q8NA42 475 aa13.28□□□□□ -0.28
PTPRF-206ENST00000429895 IGHV3-23P01764 117 aa13.27□□□□□ -0.28
PTPRF-206ENST00000429895 C2orf83Q53S99 150 aa13.27□□□□□ -0.28
PTPRF-206ENST00000429895 ZCCHC14Q8WYQ9 949 aaKnown RBP13.27□□□□□ -0.28
PTPRF-206ENST00000429895 ZNF256Q9Y2P7 627 aaPredicted RBP13.27□□□□□ -0.28
PTPRF-206ENST00000429895 RAXQ9Y2V3 346 aa13.27□□□□□ -0.28
PTPRF-206ENST00000429895 ATG2BQ96BY7 2078 aa13.27□□□□□ -0.28
PTPRF-206ENST00000429895 ASAH2BP0C7U1 165 aa13.27□□□□□ -0.28
PTPRF-206ENST00000429895 HOXA6P31267 233 aa13.27□□□□□ -0.28
PTPRF-206ENST00000429895 C1orf174Q8IYL3 243 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms