RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 IFITM3Q01628 133 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 IFITM2Q01629 132 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 BNIP2Q12982 314 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 NAB1Q13506 487 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 PNOCQ13519 176 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 CEACAM16Q2WEN9 425 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 CEACAM21Q3KPI0 293 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 ZCWPW2Q504Y3 356 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 KRTAP13-2Q52LG2 175 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 RNASE13Q5GAN3 156 aaKnown RBP1.83□□□□□ -2.12
HMGB1-201ENST00000326004 DNLZQ5SXM8 178 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 NIPAL1Q6NVV3 410 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 OPN5Q6U736 354 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 UNQ9165/PRO28630Q6UXU0 137 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 KRTAP5-5Q701N2 237 aaPredicted RBP1.83□□□□□ -2.12
HMGB1-201ENST00000326004 BBS7Q8IWZ6 715 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 IFT20Q8IY31 132 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 CYP4Z2PQ8N1L4 340 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 OSR2Q8N2R0 312 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 TMEM256Q8N2U0 113 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 DRAM1Q8N682 238 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 DNAAF3Q8N9W5 541 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 ATP6V1C2Q8NEY4 427 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 CIRBP-AS1Q8TBR5 109 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 ACTL9Q8TC94 416 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 DYNC2LI1Q8TCX1 351 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 DNAJB3Q8WWF6 145 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 GHSRQ92847 366 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 DGCR14Q96DF8 476 aaKnown RBP1.83□□□□□ -2.12
HMGB1-201ENST00000326004 RMI2Q96E14 147 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 TMA16Q96EY4 203 aaKnown RBP1.83□□□□□ -2.12
HMGB1-201ENST00000326004 OR4K3Q96R72 315 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 METTL26Q96S19 204 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 HBEGFQ99075 208 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 RBBP8Q99708 897 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 SEC22CQ9BRL7 303 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 DCUN1D5Q9BTE7 237 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 ZNF426Q9BUY5 554 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 POTEKPQ9BYX7 375 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 POMKQ9H5K3 350 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 RDH14Q9HBH5 336 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 WFDC1Q9HC57 220 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 ABCB9Q9NP78 766 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 GINS2Q9Y248 185 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 ERGIC3Q9Y282 383 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 ZFHX3Q15911 3703 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 THADAQ6YHU6 1953 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 COL1A2P08123 1366 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 DMXL2Q8TDJ6 3036 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 TSC2P49815 1807 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 IGKV1D-17A0A075B6S4 117 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 IGHV6-1A0A0B4J1U7 121 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 IGHV7-4-1A0A0J9YVY3 117 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 SMIM31A0A1B0GVY4 71 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 CCDC160A6NGH7 325 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 SIGLEC16A6NMB1 481 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 MIF4GDA9UHW6 222 aaKnown RBP1.82□□□□□ -2.12
HMGB1-201ENST00000326004 H0YJX3 145 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 M0R1X1 148 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 TCAPO15273 167 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 FABP7O15540 132 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 CCDC22O60826 627 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 NOS1APO75052 506 aaPredicted RBP1.82□□□□□ -2.12
HMGB1-201ENST00000326004 CRTAPO75718 401 aaPredicted RBP1.82□□□□□ -2.12
HMGB1-201ENST00000326004 DCTN3O75935 186 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 RAB36O95755 333 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 ASS1P00966 412 aaKnown RBP1.82□□□□□ -2.12
HMGB1-201ENST00000326004 CD5P06127 495 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 IGKV5-2P06315 115 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 CELP19835 753 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 ME2P23368 584 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 G0S2P27469 103 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 HLA-DMAP28067 261 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 PSMB5P28074 263 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 HOXA6P31267 233 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 LAMTOR4Q0VGL1 99 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 RGS21Q2M5E4 152 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 CLEC19AQ6UXS0 136 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 PP632Q6XCG6 107 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 MDP1Q86V88 176 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 LFNGQ8NES3 379 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 OR4K2Q8NGD2 314 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 OR1J4Q8NGS1 313 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 BLNKQ8WV28 456 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 DCAKDQ8WVC6 231 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 RASSF5Q8WWW0 418 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 RAD51AP1Q96B01 352 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 RMND5BQ96G75 393 aaPredicted RBP1.82□□□□□ -2.12
HMGB1-201ENST00000326004 RILPQ96NA2 401 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 PPP1R2P1Q96PQ5 205 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 RTBDNQ9BSG5 229 aaPredicted RBP1.82□□□□□ -2.12
HMGB1-201ENST00000326004 GGTLC1Q9BX51 225 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 LHX5Q9H2C1 402 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 TRIM45Q9H8W5 580 aaPredicted RBP1.82□□□□□ -2.12
HMGB1-201ENST00000326004 C8orf17Q9NRJ1 99 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 PARVAQ9NVD7 372 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 TAS2R13Q9NYV9 303 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 DNAJC27Q9NZQ0 273 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 NAGKQ9UJ70 344 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 CELSR3Q9NYQ7 3312 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms