RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 HCP5Q6MZN7 132 aa9.05□□□□□ -0.96
CLIP1-201ENST00000302528 WIPI2Q9Y4P8 454 aa9.05□□□□□ -0.96
CLIP1-201ENST00000302528 A0A1B0GV72 72 aa9.05□□□□□ -0.96
CLIP1-201ENST00000302528 SELENOTP62341 195 aa9.05□□□□□ -0.96
CLIP1-201ENST00000302528 NKG7Q16617 165 aa9.05□□□□□ -0.96
CLIP1-201ENST00000302528 TMEM177Q53S58 311 aa9.05□□□□□ -0.96
CLIP1-201ENST00000302528 INO80CQ6PI98 192 aaPredicted RBP9.05□□□□□ -0.96
CLIP1-201ENST00000302528 OR10AG1Q8NH19 301 aa9.05□□□□□ -0.96
CLIP1-201ENST00000302528 ZDHHC8Q9ULC8 765 aa9.05□□□□□ -0.96
CLIP1-201ENST00000302528 NHSL1Q5SYE7 1610 aa9.05□□□□□ -0.96
CLIP1-201ENST00000302528 NAT2P11245 290 aa9.05□□□□□ -0.96
CLIP1-201ENST00000302528 PWWP2BQ6NUJ5 590 aa9.05□□□□□ -0.96
CLIP1-201ENST00000302528 CBLN3Q6UW01 205 aa9.05□□□□□ -0.96
CLIP1-201ENST00000302528 CTSVO60911 334 aa9.05□□□□□ -0.96
CLIP1-201ENST00000302528 CYB5R3P00387 301 aaPredicted RBP9.05□□□□□ -0.96
CLIP1-201ENST00000302528 AMY1AP04745 511 aa9.05□□□□□ -0.96
CLIP1-201ENST00000302528 SMIM13P0DJ93 91 aa9.05□□□□□ -0.96
CLIP1-201ENST00000302528 SLC25A53Q5H9E4 307 aa9.05□□□□□ -0.96
CLIP1-201ENST00000302528 TMEM170BQ5T4T1 132 aa9.05□□□□□ -0.96
CLIP1-201ENST00000302528 PRSS41Q7RTY9 318 aa9.05□□□□□ -0.96
CLIP1-201ENST00000302528 MRPL16Q9NX20 251 aaKnown RBP9.05□□□□□ -0.96
CLIP1-201ENST00000302528 FAM206AQ9NX38 181 aa9.05□□□□□ -0.96
CLIP1-201ENST00000302528 CTDSPLO15194 276 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 MC5RP33032 325 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 PARLQ9H300 379 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 LEUTXA8MZ59 168 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 FXYD1O00168 92 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 IGLV3-27P01718 113 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 GAB4Q2WGN9 574 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 ADAD2Q8NCV1 583 aaKnown RBP9.04□□□□□ -0.96
CLIP1-201ENST00000302528 SRSF12Q8WXF0 261 aaKnown RBP9.04□□□□□ -0.96
CLIP1-201ENST00000302528 SMOC1Q9H4F8 434 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 TUBA4BQ9H853 241 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 TRBV7-9A0A0J9YWB2 115 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 OR11H12B2RN74 326 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 TSPAN2O60636 221 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 SFTPCP11686 197 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 EPHA8P29322 1005 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-201ENST00000302528 RELQ04864 619 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-201ENST00000302528 CYB561D1Q8N8Q1 229 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 OR11H1Q8NG94 326 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 OR11H2Q8NH07 326 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 DCTN5Q9BTE1 182 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 KNTC1P50748 2209 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 LNP1A1A4G5 178 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 CCL8P80075 99 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 SERF2P84101 59 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 HIST1H1AQ02539 215 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-201ENST00000302528 TMEM45BQ96B21 275 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 MRPL18Q9H0U6 180 aaKnown RBP9.04□□□□□ -0.96
CLIP1-201ENST00000302528 RBMY1BA6NDE4 496 aaKnown RBP9.04□□□□□ -0.96
CLIP1-201ENST00000302528 RBMY1EA6NEQ0 496 aaKnown RBP9.04□□□□□ -0.96
CLIP1-201ENST00000302528 LIPT2A6NK58 231 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 DLL1O00548 723 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 THY1P04216 161 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 FCGR3AP08637 254 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 RBMY1DP0C7P1 496 aaKnown RBP9.04□□□□□ -0.96
CLIP1-201ENST00000302528 RBMY1A1P0DJD3 496 aaKnown RBP9.04□□□□□ -0.96
CLIP1-201ENST00000302528 RBMY1CP0DJD4 496 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 MGAT2Q10469 447 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 CCL13Q99616 98 aa9.04□□□□□ -0.96
CLIP1-201ENST00000302528 LEMD1Q68G75 181 aa9.03□□□□□ -0.96
CLIP1-201ENST00000302528 Q6ZNB5 142 aa9.03□□□□□ -0.96
CLIP1-201ENST00000302528 C1orf210Q8IVY1 113 aa9.03□□□□□ -0.96
CLIP1-201ENST00000302528 TP53I13Q8NBR0 393 aaPredicted RBP9.03□□□□□ -0.96
CLIP1-201ENST00000302528 RASL10BQ96S79 203 aa9.03□□□□□ -0.96
CLIP1-201ENST00000302528 A0A1W2PQM1 296 aa9.03□□□□□ -0.96
CLIP1-201ENST00000302528 SNRPD3P62318 126 aaKnown RBP9.03□□□□□ -0.96
CLIP1-201ENST00000302528 RAE1P78406 368 aaKnown RBP9.03□□□□□ -0.96
CLIP1-201ENST00000302528 FAM159AQ6UWV7 190 aa9.03□□□□□ -0.96
CLIP1-201ENST00000302528 GMPPAQ96IJ6 420 aaPredicted RBP9.03□□□□□ -0.96
CLIP1-201ENST00000302528 TNFSF18Q9UNG2 199 aa9.03□□□□□ -0.96
CLIP1-201ENST00000302528 DNAJC13O75165 2243 aa9.03□□□□□ -0.96
CLIP1-201ENST00000302528 PGFP49763 221 aa9.03□□□□□ -0.96
CLIP1-201ENST00000302528 MESTQ5EB52 335 aa9.03□□□□□ -0.96
CLIP1-201ENST00000302528 PQLC2Q6ZP29 291 aa9.03□□□□□ -0.96
CLIP1-201ENST00000302528 SHISA5Q8N114 240 aa9.03□□□□□ -0.96
CLIP1-201ENST00000302528 DNASE2BQ8WZ79 361 aa9.03□□□□□ -0.96
CLIP1-201ENST00000302528 MARS2Q96GW9 593 aaKnown RBP9.03□□□□□ -0.96
CLIP1-201ENST00000302528 PMCHL2Q9BQD1 86 aa9.03□□□□□ -0.96
CLIP1-201ENST00000302528 TOMM7Q9P0U1 55 aa9.03□□□□□ -0.96
CLIP1-201ENST00000302528 A0A1B0GTL3 188 aa9.03□□□□□ -0.96
CLIP1-201ENST00000302528 IGKV3-20P01619 116 aa9.03□□□□□ -0.96
CLIP1-201ENST00000302528 ATP5G2Q06055 141 aa9.03□□□□□ -0.96
CLIP1-201ENST00000302528 OR2Y1Q8NGV0 311 aa9.03□□□□□ -0.96
CLIP1-201ENST00000302528 ZNF430Q9H8G1 570 aaPredicted RBP9.03□□□□□ -0.96
CLIP1-201ENST00000302528 SLC6A13Q9NSD5 602 aa9.03□□□□□ -0.96
CLIP1-201ENST00000302528 FRRS1LQ9P0K9 344 aa9.03□□□□□ -0.96
CLIP1-201ENST00000302528 KCNE5Q9UJ90 142 aa9.03□□□□□ -0.96
CLIP1-201ENST00000302528 ADRA2AP08913 450 aa9.02□□□□□ -0.96
CLIP1-201ENST00000302528 ARF6P62330 175 aa9.02□□□□□ -0.96
CLIP1-201ENST00000302528 RUNX1Q01196 453 aa9.02□□□□□ -0.96
CLIP1-201ENST00000302528 DMKNQ6E0U4 476 aaPredicted RBP9.02□□□□□ -0.96
CLIP1-201ENST00000302528 MMD2Q8IY49 270 aa9.02□□□□□ -0.96
CLIP1-201ENST00000302528 GPBAR1Q8TDU6 330 aa9.02□□□□□ -0.96
CLIP1-201ENST00000302528 TRBV20OR9-2A0A075B6H5 130 aa9.02□□□□□ -0.97
CLIP1-201ENST00000302528 C9JCJ5 164 aa9.02□□□□□ -0.97
CLIP1-201ENST00000302528 CEACAM4O75871 244 aa9.02□□□□□ -0.97
CLIP1-201ENST00000302528 CFAP161Q6P656 301 aa9.02□□□□□ -0.97
CLIP1-201ENST00000302528 AMER3Q8N944 861 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms