RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 MT-CO2P00403 227 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 DEFA4P12838 97 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 G6PCP35575 357 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 FOLR3P41439 243 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 IER3P46695 156 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 PHYHD1Q5SRE7 291 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 Q6ZN92 141 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 TAF15Q92804 592 aaKnown RBP eCLIP9.49□□□□□ -0.89
CLN3-244ENST00000636147 RPH3ALQ9UNE2 315 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 IGHV3-43A0A0B4J1X8 118 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 C20orf202A1L168 122 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 SIAH2O43255 324 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 OR4A8P0C604 315 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 IGHV3-43DP0DP04 118 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 RAB4AP20338 218 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 HOXA6P31267 233 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 UBE2NP61088 152 aaKnown RBP9.49□□□□□ -0.89
CLN3-244ENST00000636147 MRPL49Q13405 166 aaKnown RBP9.49□□□□□ -0.89
CLN3-244ENST00000636147 C11orf42Q8N5U0 333 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 HEATR1Q9H583 2144 aaKnown RBP9.49□□□□□ -0.89
CLN3-244ENST00000636147 FSCN3Q9NQT6 498 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 MKI67P46013 3256 aaKnown RBP9.49□□□□□ -0.89
CLN3-244ENST00000636147 GZMBP10144 247 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 DSCR4P56555 118 aaPredicted RBP9.49□□□□□ -0.89
CLN3-244ENST00000636147 SERF2P84101 59 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 TNFRSF9Q07011 255 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 FAM27BQ5VT28 67 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 RHBDD2Q6NTF9 364 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 ZNF573Q86YE8 665 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 POC1BQ8TC44 478 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 ABHD3Q8WU67 409 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 ANAPC16Q96DE5 110 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 LOC102724200A0A096LPH7 203 aaPredicted RBP9.48□□□□□ -0.89
CLN3-244ENST00000636147 CTXND1A0A1B0GTU2 59 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 C3orf80F5H4A9 247 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 SELLP14151 372 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 IL15RAQ13261 267 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 OR5AU1Q8NGC0 362 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 C10orf35Q96D05 121 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 AP1S3Q96PC3 154 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 RIMS4Q9H426 269 aaPredicted RBP9.48□□□□□ -0.89
CLN3-244ENST00000636147 CLCF1Q9UBD9 225 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 TICRRQ7Z2Z1 1910 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 CEACAM18A8MTB9 384 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 SYNGR1O43759 233 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 CBR3O75828 277 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 KBTBD11O94819 623 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 OR4D5Q8NGN0 318 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 OR10G8Q8NGN5 311 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 SSMEM1Q8WWF3 244 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 IMMP2LQ96T52 175 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 OR2D2Q9H210 308 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 CA11O75493 328 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 TFPI2P48307 235 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 KIAA1644Q3SXP7 199 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 GUSBP11Q6P575 273 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 OR10D3Q8NH80 312 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 GATAD1Q8WUU5 269 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 ACY3Q96HD9 319 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 CIB3Q96Q77 187 aaPredicted RBP9.48□□□□□ -0.89
CLN3-244ENST00000636147 TMEM147Q9BVK8 224 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 OR2H1Q9GZK4 316 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 HIPK2Q9H2X6 1198 aa9.48□□□□□ -0.89
CLN3-244ENST00000636147 TRAV38-1A0A0B4J264 116 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 IGKV1-12A0A0C4DH73 117 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 LRP5LA4QPB2 252 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 OR7C2O60412 319 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 IGKV1D-12P01611 117 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 ANOS1P23352 680 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 C1orf53Q5VUE5 145 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 OR51G1Q8NGK1 321 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 ZNF501Q96CX3 271 aaPredicted RBP9.47□□□□□ -0.89
CLN3-244ENST00000636147 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.47□□□□□ -0.89
CLN3-244ENST00000636147 TMEM38BQ9NVV0 291 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 OR1A1Q9P1Q5 309 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 B4GALT7Q9UBV7 327 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 PGPEP1LA6NFU8 196 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 NPIPB13A6NJU9 1138 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 SNURFLB1AK76 121 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 NPIPB4C9JG80 1138 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 ZNF253O75346 499 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 HPRT1P00492 218 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 LINC00271P0C7V0 271 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 NUBP1P53384 320 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 RAC1P63000 192 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 OR8B8Q15620 311 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 LINC00696Q6ZRV3 163 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 STARD4Q96DR4 205 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 AKIRIN1Q9H9L7 192 aaPredicted RBP9.47□□□□□ -0.89
CLN3-244ENST00000636147 MANBALQ9NQG1 85 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 ABI3Q9P2A4 366 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 IGHV1OR15-9A0A0B4J2B8 117 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 H0Y980 276 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 UCP3P55916 312 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 NUTF2P61970 127 aaKnown RBP9.47□□□□□ -0.89
CLN3-244ENST00000636147 RPL23P62829 140 aaKnown RBP9.47□□□□□ -0.89
CLN3-244ENST00000636147 ABHD17BQ5VST6 288 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 PRR27Q6MZM9 219 aa9.47□□□□□ -0.89
CLN3-244ENST00000636147 HSBP1O75506 76 aa9.46□□□□□ -0.89
CLN3-244ENST00000636147 TIAF1O95411 115 aa9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms