RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 IL22RA2Q969J5 263 aa12.08□□□□□ -0.47
VRK3-217ENST00000599538 ARL11Q969Q4 196 aa12.08□□□□□ -0.47
VRK3-217ENST00000599538 PLPPR2Q96GM1 343 aa12.08□□□□□ -0.47
VRK3-217ENST00000599538 OR2D2Q9H210 308 aa12.08□□□□□ -0.47
VRK3-217ENST00000599538 PIGMQ9H3S5 423 aa12.08□□□□□ -0.47
VRK3-217ENST00000599538 DUX4Q9UBX2 424 aa12.08□□□□□ -0.47
VRK3-217ENST00000599538 TMA7Q9Y2S6 64 aaKnown RBP12.08□□□□□ -0.47
VRK3-217ENST00000599538 NBASA2RRP1 2371 aa12.08□□□□□ -0.48
VRK3-217ENST00000599538 POLEQ07864 2286 aa12.08□□□□□ -0.48
VRK3-217ENST00000599538 DUXBA0A1W2PPF3 345 aa12.08□□□□□ -0.48
VRK3-217ENST00000599538 JTBO76095 146 aa12.08□□□□□ -0.48
VRK3-217ENST00000599538 LHBP01229 141 aa12.08□□□□□ -0.48
VRK3-217ENST00000599538 IGHV1-46P01743 117 aa12.08□□□□□ -0.48
VRK3-217ENST00000599538 GAPDHP04406 335 aaKnown RBP12.08□□□□□ -0.48
VRK3-217ENST00000599538 S100GP29377 79 aa12.08□□□□□ -0.48
VRK3-217ENST00000599538 CFHR2P36980 270 aa12.08□□□□□ -0.48
VRK3-217ENST00000599538 LPAR6P43657 344 aa12.08□□□□□ -0.48
VRK3-217ENST00000599538 ID4P47928 161 aa12.08□□□□□ -0.48
VRK3-217ENST00000599538 CAV2P51636 162 aa12.08□□□□□ -0.48
VRK3-217ENST00000599538 RPL30P62888 115 aaKnown RBP12.08□□□□□ -0.48
VRK3-217ENST00000599538 EWSR1Q01844 656 aaKnown RBP eCLIP12.08□□□□□ -0.48
VRK3-217ENST00000599538 MZT1Q08AG7 82 aa12.08□□□□□ -0.48
VRK3-217ENST00000599538 LTC4SQ16873 150 aa12.08□□□□□ -0.48
VRK3-217ENST00000599538 GPR157Q5UAW9 335 aa12.08□□□□□ -0.48
VRK3-217ENST00000599538 OR2C3Q8N628 320 aa12.08□□□□□ -0.48
VRK3-217ENST00000599538 AKR1E2Q96JD6 320 aa12.08□□□□□ -0.48
VRK3-217ENST00000599538 SPIN2AQ99865 258 aa12.08□□□□□ -0.48
VRK3-217ENST00000599538 SPIN2BQ9BPZ2 258 aa12.08□□□□□ -0.48
VRK3-217ENST00000599538 DCAF16Q9NXF7 216 aa12.08□□□□□ -0.48
VRK3-217ENST00000599538 LPAR3Q9UBY5 353 aa12.08□□□□□ -0.48
VRK3-217ENST00000599538 RFNGQ9Y644 331 aa12.08□□□□□ -0.48
VRK3-217ENST00000599538 KIAA1324LA8MWY0 1029 aaPredicted RBP12.07□□□□□ -0.48
VRK3-217ENST00000599538 C15orf65H3BRN8 121 aa12.07□□□□□ -0.48
VRK3-217ENST00000599538 ABCD4O14678 606 aa12.07□□□□□ -0.48
VRK3-217ENST00000599538 PITX3O75364 302 aa12.07□□□□□ -0.48
VRK3-217ENST00000599538 OMGP23515 440 aa12.07□□□□□ -0.48
VRK3-217ENST00000599538 CD80P33681 288 aa12.07□□□□□ -0.48
VRK3-217ENST00000599538 OR2B11Q5JQS5 317 aa12.07□□□□□ -0.48
VRK3-217ENST00000599538 ZNF295-AS1Q8N0V1 137 aa12.07□□□□□ -0.48
VRK3-217ENST00000599538 ZCCHC24Q8N2G6 241 aaKnown RBP12.07□□□□□ -0.48
VRK3-217ENST00000599538 UBAC2Q8NBM4 344 aa12.07□□□□□ -0.48
VRK3-217ENST00000599538 BPIFCQ8NFQ6 507 aa12.07□□□□□ -0.48
VRK3-217ENST00000599538 MARC2Q969Z3 335 aa12.07□□□□□ -0.48
VRK3-217ENST00000599538 ZFP57Q9NU63 452 aa12.07□□□□□ -0.48
VRK3-217ENST00000599538 JKAMPQ9P055 326 aa12.07□□□□□ -0.48
VRK3-217ENST00000599538 RNF115Q9Y4L5 304 aa12.07□□□□□ -0.48
VRK3-217ENST00000599538 B8ZZF3 427 aa12.07□□□□□ -0.48
VRK3-217ENST00000599538 CHST1O43916 411 aa12.07□□□□□ -0.48
VRK3-217ENST00000599538 RAMP3O60896 148 aa12.07□□□□□ -0.48
VRK3-217ENST00000599538 ARHGDIBP52566 201 aa12.07□□□□□ -0.48
VRK3-217ENST00000599538 PAX9P55771 341 aa12.07□□□□□ -0.48
VRK3-217ENST00000599538 BTNL3Q6UXE8 466 aa12.07□□□□□ -0.48
VRK3-217ENST00000599538 OR10Z1Q8NGY1 313 aa12.07□□□□□ -0.48
VRK3-217ENST00000599538 SH3BGRL3Q9H299 93 aa12.07□□□□□ -0.48
VRK3-217ENST00000599538 GCM1Q9NP62 436 aa12.07□□□□□ -0.48
VRK3-217ENST00000599538 KRBOX1C9JBD0 128 aa12.06□□□□□ -0.48
VRK3-217ENST00000599538 CYB5R3P00387 301 aaPredicted RBP12.06□□□□□ -0.48
VRK3-217ENST00000599538 WNT2P09544 360 aa12.06□□□□□ -0.48
VRK3-217ENST00000599538 BRWD1-AS2P59051 145 aa12.06□□□□□ -0.48
VRK3-217ENST00000599538 CLINT1Q14677 625 aa12.06□□□□□ -0.48
VRK3-217ENST00000599538 UTF1Q5T230 341 aa12.06□□□□□ -0.48
VRK3-217ENST00000599538 PXDC1Q5TGL8 231 aa12.06□□□□□ -0.48
VRK3-217ENST00000599538 TMEM252Q8N6L7 170 aa12.06□□□□□ -0.48
VRK3-217ENST00000599538 ZNF645Q8N7E2 425 aa12.06□□□□□ -0.48
VRK3-217ENST00000599538 ABHD14BQ96IU4 210 aa12.06□□□□□ -0.48
VRK3-217ENST00000599538 ARV1Q9H2C2 271 aa12.06□□□□□ -0.48
VRK3-217ENST00000599538 HRH4Q9H3N8 390 aa12.06□□□□□ -0.48
VRK3-217ENST00000599538 CACNG5Q9UF02 275 aa12.06□□□□□ -0.48
VRK3-217ENST00000599538 MED6O75586 246 aa12.05□□□□□ -0.48
VRK3-217ENST00000599538 CST7O76096 145 aa12.05□□□□□ -0.48
VRK3-217ENST00000599538 IGHV3-7P01780 117 aa12.05□□□□□ -0.48
VRK3-217ENST00000599538 SULT1A2P50226 295 aa12.05□□□□□ -0.48
VRK3-217ENST00000599538 TNFAIP6P98066 277 aaPredicted RBP12.05□□□□□ -0.48
VRK3-217ENST00000599538 BSPH1Q075Z2 132 aa12.05□□□□□ -0.48
VRK3-217ENST00000599538 EIF4EBP1Q13541 118 aaPredicted RBP12.05□□□□□ -0.48
VRK3-217ENST00000599538 TMEM108Q6UXF1 575 aa12.05□□□□□ -0.48
VRK3-217ENST00000599538 SMIM8Q96KF7 97 aa12.05□□□□□ -0.48
VRK3-217ENST00000599538 LURAP1Q96LR2 239 aa12.05□□□□□ -0.48
VRK3-217ENST00000599538 LYRM2Q9NU23 88 aaPredicted RBP12.05□□□□□ -0.48
VRK3-217ENST00000599538 ELOVL5Q9NYP7 299 aa12.05□□□□□ -0.48
VRK3-217ENST00000599538 DYSFO75923 2080 aa12.05□□□□□ -0.48
VRK3-217ENST00000599538 ODAMA1E959 279 aa12.05□□□□□ -0.48
VRK3-217ENST00000599538 H3BP45 60 aa12.05□□□□□ -0.48
VRK3-217ENST00000599538 ST8SIA5O15466 376 aa12.05□□□□□ -0.48
VRK3-217ENST00000599538 RPS23P62266 143 aaKnown RBP12.05□□□□□ -0.48
VRK3-217ENST00000599538 EIF5AP63241 154 aaKnown RBP12.05□□□□□ -0.48
VRK3-217ENST00000599538 C1QTNF12Q5T7M4 302 aa12.05□□□□□ -0.48
VRK3-217ENST00000599538 HSD17B11Q8NBQ5 300 aa12.05□□□□□ -0.48
VRK3-217ENST00000599538 DEFB108BQ8NET1 73 aa12.05□□□□□ -0.48
VRK3-217ENST00000599538 RNASE11Q8TAA1 199 aaKnown RBP12.05□□□□□ -0.48
VRK3-217ENST00000599538 TOLLIPQ9H0E2 274 aa12.05□□□□□ -0.48
VRK3-217ENST00000599538 TMEM231Q9H6L2 316 aa12.05□□□□□ -0.48
VRK3-217ENST00000599538 PLEKHF2Q9H8W4 249 aa12.05□□□□□ -0.48
VRK3-217ENST00000599538 CHD8Q9HCK8 2581 aa12.05□□□□□ -0.48
VRK3-217ENST00000599538 RAI1Q7Z5J4 1906 aaPredicted RBP12.05□□□□□ -0.48
VRK3-217ENST00000599538 C1QL1O75973 258 aa12.04□□□□□ -0.48
VRK3-217ENST00000599538 GATA4P43694 442 aa12.04□□□□□ -0.48
VRK3-217ENST00000599538 FHITP49789 147 aa12.04□□□□□ -0.48
VRK3-217ENST00000599538 TMPRSS3P57727 454 aa12.04□□□□□ -0.48
VRK3-217ENST00000599538 CCL8P80075 99 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms