RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 SPTSSAQ969W0 71 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 ZNF524Q96C55 264 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 DNAJA3Q96EY1 480 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 REEP6Q96HR9 211 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 WFIKKN1Q96NZ8 548 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 OXGR1Q96P68 337 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 MS4A10Q96PG2 267 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 ZNF385AQ96PM9 386 aaKnown RBP2.45□□□□□ -2.02
SLIRP-208ENST00000556956 GAL3ST4Q96RP7 486 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 TBX15Q96SF7 602 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 SMIM7Q9BQ49 75 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 C20orf144Q9BQM9 153 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 FAAP24Q9BTP7 215 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 TMEM208Q9BTX3 173 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 MRPL13Q9BYD1 178 aaKnown RBP2.45□□□□□ -2.02
SLIRP-208ENST00000556956 TMEM222Q9H0R3 208 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 MAGT1Q9H0U3 335 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 OPN3Q9H1Y3 402 aaPredicted RBP2.45□□□□□ -2.02
SLIRP-208ENST00000556956 FAM60AQ9NP50 221 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 MANBALQ9NQG1 85 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 SLC2A9Q9NRM0 540 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 SLC39A9Q9NUM3 307 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 OR6C3Q9NZP0 311 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 COPS7AQ9UBW8 275 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 MCTS1Q9ULC4 181 aaKnown RBP2.45□□□□□ -2.02
SLIRP-208ENST00000556956 PIGLQ9Y2B2 252 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 MRPS18CQ9Y3D5 142 aaKnown RBP2.45□□□□□ -2.02
SLIRP-208ENST00000556956 CLDN16Q9Y5I7 305 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 TIMM9Q9Y5J7 89 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 TRAPPC1Q9Y5R8 145 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 LHFPL6Q9Y693 200 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 TTC3P53804 2025 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 PCM1Q15154 2024 aa2.45□□□□□ -2.02
SLIRP-208ENST00000556956 TRAV9-1A0A075B6T8 112 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 IGKV1D-43A0A0B4J1Z2 117 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 A0A0U1RQK1 487 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 LOC102725191A0A1B0GVB3 256 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 A0A1W2PPQ1 181 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 ZNF320A2RRD8 509 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 FAM90A10PA6NDY2 464 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 FAM90A18PA6NE21 464 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 FAM90A16PA6NEW6 464 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 FAM90A20PA6NIJ5 464 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 FAM90A8PA6NJQ4 464 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 FAM90A7PA6NKC0 464 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 SHISA7A6NL88 538 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 CD300LBA8K4G0 201 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 FAM90A22PA8MWA6 464 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 FAM90A12PA8MX19 464 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 FAM90A5PA8MXJ8 464 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 FAM90A23PA8MXZ1 464 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 F6UZH7 168 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 H0Y980 276 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 ITGB1BP1O14713 200 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 RER1O15258 196 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 TOX3O15405 576 aaPredicted RBP2.44□□□□□ -2.02
SLIRP-208ENST00000556956 PRKNO60260 465 aaPredicted RBP2.44□□□□□ -2.02
SLIRP-208ENST00000556956 PDCD6O75340 191 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 CST7O76096 145 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 HPRT1P00492 218 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 NRASP01111 189 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 KRASP01116 189 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 PDGFBP01127 241 aaPredicted RBP2.44□□□□□ -2.02
SLIRP-208ENST00000556956 PPYP01298 95 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 GYPAP02724 150 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 IGKV3-11P04433 115 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 MMP7P09237 267 aaPredicted RBP2.44□□□□□ -2.02
SLIRP-208ENST00000556956 FAM90A15PP0C7V4 464 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 FAM90A13PP0C7W8 464 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 FAM90A14PP0C7W9 464 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 FAM90A24PP0C7X0 464 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 CD99P14209 185 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 ZNF17P17021 662 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 TCN2P20062 427 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 GZMHP20718 246 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 IL11P20809 199 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 MSR1P21757 451 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 CD82P27701 267 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 BRS3P32247 399 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 OPRM1P35372 400 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 MDH2P40926 338 aaKnown RBP2.44□□□□□ -2.02
SLIRP-208ENST00000556956 RPL29P47914 159 aaKnown RBP2.44□□□□□ -2.02
SLIRP-208ENST00000556956 FUT6P51993 359 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 UBE2NP61088 152 aaKnown RBP2.44□□□□□ -2.02
SLIRP-208ENST00000556956 RPL23P62829 140 aaKnown RBP2.44□□□□□ -2.02
SLIRP-208ENST00000556956 MRPS11P82912 194 aaKnown RBP2.44□□□□□ -2.02
SLIRP-208ENST00000556956 MRPS34P82930 218 aaKnown RBP2.44□□□□□ -2.02
SLIRP-208ENST00000556956 ZNF92Q03936 586 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 ZFP36L1Q07352 338 aaKnown RBP2.44□□□□□ -2.02
SLIRP-208ENST00000556956 ZNF154Q13106 437 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 MFAP5Q13361 173 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 P2RY6Q15077 328 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 TMEM183BQ1AE95 376 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 LRRC75BQ2VPJ9 315 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 DEFB110Q30KQ9 67 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 SLC25A53Q5H9E4 307 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 CXorf66Q5JRM2 361 aaPredicted RBP2.44□□□□□ -2.02
SLIRP-208ENST00000556956 RIPPLY2Q5TAB7 128 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 TSPO2Q5TGU0 170 aa2.44□□□□□ -2.02
SLIRP-208ENST00000556956 CARD17Q5XLA6 110 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms